Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G012720.1 | Barley | cytosol, plastid | 98.14 | 98.14 |
| TraesCS1A01G062200.1 | Wheat | cytosol, plastid | 92.56 | 96.6 |
| TraesCS2D01G008400.1 | Wheat | plastid | 96.28 | 96.28 |
| Zm00001d035498_P001 | Maize | plastid | 67.91 | 66.06 |
| EES18939 | Sorghum | plastid | 66.98 | 65.75 |
| Zm00001d010978_P001 | Maize | plastid | 62.33 | 63.21 |
| Solyc11g072470.1.1 | Tomato | plastid | 50.7 | 57.67 |
| KRH10407 | Soybean | mitochondrion | 46.05 | 57.56 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 53.02 | 56.44 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 53.49 | 56.37 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 51.16 | 56.12 |
| Solyc06g005090.2.1 | Tomato | plastid | 50.7 | 55.05 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 48.37 | 54.74 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 51.16 | 53.92 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 49.3 | 53.81 |
| AT1G07900.1 | Thale cress | plastid | 46.98 | 53.16 |
| PGSC0003DMT400065346 | Potato | plastid | 51.63 | 53.11 |
| KRH24932 | Soybean | nucleus, plastid | 49.77 | 52.97 |
| KRG89044 | Soybean | nucleus, plastid | 49.77 | 52.45 |
| KRH22937 | Soybean | plastid | 47.91 | 52.02 |
| CDY22713 | Canola | plastid | 44.19 | 49.74 |
| CDY06285 | Canola | nucleus, plastid | 43.72 | 49.47 |
| KRG91848 | Soybean | plastid | 50.23 | 48.65 |
| Bra018675.1-P | Field mustard | plastid | 46.51 | 48.54 |
| KRH34918 | Soybean | plastid | 49.77 | 48.2 |
| GSMUA_Achr10P... | Banana | plastid | 54.42 | 46.8 |
| TraesCS5B01G150800.1 | Wheat | plastid | 38.14 | 46.33 |
| CDY31207 | Canola | plastid | 46.51 | 46.3 |
| CDY62454 | Canola | plastid | 46.51 | 46.08 |
| CDX77182 | Canola | plastid | 46.51 | 46.08 |
| PGSC0003DMT400065297 | Potato | plastid | 46.05 | 45.83 |
| TraesCS4B01G197100.1 | Wheat | plastid | 47.44 | 45.74 |
| CDY15755 | Canola | plastid | 46.05 | 45.62 |
| CDY04570 | Canola | plastid | 46.05 | 45.41 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 43.72 | 45.41 |
| AT2G28500.1 | Thale cress | plastid | 47.91 | 44.4 |
| CDX83290 | Canola | plastid | 47.44 | 44.16 |
| Bra000491.1-P | Field mustard | plastid | 47.44 | 44.16 |
| Bra035698.1-P | Field mustard | plastid | 46.98 | 44.1 |
| CDX93609 | Canola | nucleus | 46.05 | 44.0 |
| CDX95115 | Canola | plastid | 46.51 | 43.86 |
| TraesCS4B01G016200.1 | Wheat | plastid | 35.35 | 43.43 |
| Bra011942.1-P | Field mustard | plastid | 46.51 | 42.92 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 46.51 | 42.73 |
| TraesCS1B01G235700.1 | Wheat | mitochondrion | 34.88 | 39.68 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 30.7 | 27.85 |
| TraesCS3B01G108500.1 | Wheat | plastid | 33.02 | 27.63 |
| TraesCS3B01G435700.1 | Wheat | plastid | 30.23 | 25.1 |
| TraesCS1B01G270400.1 | Wheat | plastid | 30.7 | 25.1 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 31.63 | 23.94 |
| TraesCS3B01G378100.1 | Wheat | plastid | 32.09 | 23.63 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G080600.1 | EnsemblPlantsGene:TraesCS1B01G080600 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF14 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr1B:-:63090835..63091482
Molecular Weight (calculated)
22096.2 Da
IEP (calculated)
6.610
GRAVY (calculated)
0.012
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSGDTAPL HSSPTPTSPP AMATGTAVVM SPCAACKILR RRCVDRCVLA PYFPPTDPHK FATAHRVFGA SNIIKLLQDL PEEQRADAVS SMVYEAAARA
101: RDPVYGSAGA ICQLQRQVDG LKAQLARAQA ELAAARAHHA HLVALLCVEV ATAAATPPQD AYCTGVGGSQ SQLAAPPGVG SAPTDALYTV DGSAAGGGGI
201: MQAGHVGWAD EPLWT
101: RDPVYGSAGA ICQLQRQVDG LKAQLARAQA ELAAARAHHA HLVALLCVEV ATAAATPPQD AYCTGVGGSQ SQLAAPPGVG SAPTDALYTV DGSAAGGGGI
201: MQAGHVGWAD EPLWT
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.