Factsheet for TraesCS4B01G016200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G297500.1	Wheat	plastid	96.0	97.11
HORVU4Hr1G002480.2	Barley	cytosol	91.43	89.89
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	72.0	63.32
EER93717	Sorghum	plastid	69.71	58.94
KRH50484	Soybean	cytosol, nucleus, plastid	52.57	57.86
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	52.57	57.14
Zm00001d033466_P001	Maize	plastid	68.57	56.87
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	55.43	56.73
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	55.43	56.73
KRG89441	Soybean	cytosol, nucleus, plastid	53.14	56.71
Solyc02g069440.2.1	Tomato	nucleus	52.0	56.52
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	54.29	55.88
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.29	55.88
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	53.71	55.29
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	54.86	54.86
KRH43747	Soybean	mitochondrion	55.43	54.8
TraesCS4D01G014600.1	Wheat	nucleus	91.43	54.42
GSMUA_Achr5P02190_001	Banana	mitochondrion	51.43	54.22
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.57	53.49
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	52.57	53.49
GSMUA_Achr2P13170_001	Banana	nucleus	53.14	53.45
KRH13706	Soybean	mitochondrion	54.29	53.37
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	52.0	52.91
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	52.0	52.91
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	53.71	51.65
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	54.86	51.61
CDY40054	Canola	mitochondrion	48.0	51.53
Bra026042.1-P	Field mustard	mitochondrion	47.43	50.92
CDY66794	Canola	mitochondrion	47.43	50.92
CDX81767	Canola	cytosol, nucleus, plastid	47.43	50.61
Solyc12g100150.1.1	Tomato	mitochondrion	48.57	50.6
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	48.57	50.3
CDY50999	Canola	cytosol, mitochondrion, plastid	46.86	50.0
Bra026716.1-P	Field mustard	mitochondrion	46.29	49.39
AT1G16530.1	Thale cress	mitochondrion	46.29	49.09
TraesCS5B01G150800.1	Wheat	plastid	45.71	45.2
TraesCS1B01G235700.1	Wheat	mitochondrion	45.71	42.33
TraesCS1B01G080600.1	Wheat	cytosol, plastid	43.43	35.35
TraesCS1B01G131900.2	Wheat	nucleus	41.71	30.8
TraesCS4B01G197100.1	Wheat	plastid	37.71	29.6
TraesCS3B01G108500.1	Wheat	plastid	43.43	29.57
TraesCS3B01G435700.1	Wheat	plastid	37.14	25.1
TraesCS1B01G270400.1	Wheat	plastid	37.71	25.1
TraesCS3B01G378100.1	Wheat	plastid	40.57	24.32
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	37.14	22.89

Protein Annotations

EnsemblPlants:TraesCS4B01G016200.1	EnsemblPlantsGene:TraesCS4B01G016200	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF15	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr4B:+:11903878..11905527

Molecular Weight (calculated)

18659.2 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.196

Length

175 amino acids

Sequence
(BLAST)

001: MKEVAAGGAG VSPCAACKLL RRRCSPGCVF APYFPSGEPH RFASVHKVFG ASNISKLLQE IPAEHRGDAV SSLVYEANAR VRDPIYGCVG AITSLQRQVE
101: SLQTQLALAQ AEMVRLRMAN AYGTARHGRN GGGSTASGSP SSMSSPTKTA DHHDMAVDQS GVMELELECS RFWSF

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.