Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 97.09 | 97.09 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 97.09 | 97.09 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 96.51 | 96.51 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 79.07 | 80.0 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 73.84 | 79.87 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 77.91 | 78.82 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 78.49 | 77.14 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 73.26 | 76.83 |
| Solyc02g069440.2.1 | Tomato | nucleus | 66.86 | 71.43 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 66.86 | 71.43 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 56.98 | 59.04 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 55.23 | 54.6 |
| AT1G16530.1 | Thale cress | mitochondrion | 51.16 | 53.33 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 56.4 | 53.3 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 57.56 | 53.23 |
| TraesCS4B01G016200.1 | Wheat | plastid | 52.91 | 52.0 |
| TraesCS4A01G297500.1 | Wheat | plastid | 51.74 | 51.45 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 52.91 | 51.12 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 56.4 | 48.74 |
| EER93717 | Sorghum | plastid | 57.56 | 47.83 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 51.74 | 46.11 |
| Zm00001d033466_P001 | Maize | plastid | 55.81 | 45.5 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 41.28 | 44.65 |
| AT1G07900.1 | Thale cress | plastid | 45.93 | 41.58 |
| AT5G63090.3 | Thale cress | plastid | 44.19 | 40.86 |
| AT1G65620.1 | Thale cress | plastid | 42.44 | 36.68 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 47.09 | 36.16 |
| AT2G28500.1 | Thale cress | plastid | 45.35 | 33.62 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 52.33 | 30.61 |
| AT2G30340.2 | Thale cress | nucleus | 45.35 | 29.0 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 45.93 | 25.4 |
| AT5G66870.1 | Thale cress | nucleus | 40.7 | 22.36 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:840020 | UniProt:A0A178WLZ4 | ProteinID:AAF24588.1 | EMBL:AB473839 | ProteinID:AEE31341.1 |
| ArrayExpress:AT1G31320 | EnsemblPlantsGene:AT1G31320 | RefSeq:AT1G31320 | TAIR:AT1G31320 | RefSeq:AT1G31320-TAIR-G | EnsemblPlants:AT1G31320.1 |
| TAIR:AT1G31320.1 | EMBL:BT015067 | EMBL:BT015665 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR004883 | Symbol:LBD4 | InterPro:LOB | RefSeq:NP_174417.1 |
| ProteinID:OAP19246.1 | PFAM:PF03195 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF7 | UniProt:Q9SHE9 |
| UniParc:UPI00000A8892 | SEG:seg | : | : | : | : |
Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
Coordinates
chr1:+:11212958..11214567
Molecular Weight (calculated)
18698.2 Da
IEP (calculated)
7.773
GRAVY (calculated)
-0.348
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.