Factsheet for GSMUA_Achr4P32000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	78.57	76.88
GSMUA_Achr2P13170_001	Banana	nucleus	67.03	70.11
GSMUA_Achr5P02190_001	Banana	mitochondrion	60.44	66.27
KRH50484	Soybean	cytosol, nucleus, plastid	56.04	64.15
KRG89441	Soybean	cytosol, nucleus, plastid	56.59	62.8
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	56.04	59.65
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	55.49	59.06
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.59	58.86
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.4	58.24
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.4	58.24
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	51.1	57.76
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	53.85	57.65
Solyc02g069440.2.1	Tomato	nucleus	50.55	57.14
KRH43747	Soybean	mitochondrion	55.49	57.06
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	53.85	56.98
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	53.85	56.98
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	53.3	56.4
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	53.3	56.4
KRH13706	Soybean	mitochondrion	54.95	56.18
TraesCS4B01G016200.1	Wheat	plastid	51.65	53.71
TraesCS4A01G297500.1	Wheat	plastid	50.55	53.18
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	41.76	53.15
GSMUA_Achr10P...	Banana	mitochondrion	45.6	52.53
CDY40054	Canola	mitochondrion	46.7	52.15
GSMUA_Achr10P...	Banana	mitochondrion	45.05	51.9
CDX81767	Canola	cytosol, nucleus, plastid	46.7	51.83
HORVU4Hr1G002480.2	Barley	cytosol	50.55	51.69
Bra026042.1-P	Field mustard	mitochondrion	46.15	51.53
CDY66794	Canola	mitochondrion	46.15	51.53
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	43.96	51.28
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	56.04	51.26
CDY50999	Canola	cytosol, mitochondrion, plastid	46.15	51.22
Solyc12g100150.1.1	Tomato	mitochondrion	47.25	51.19
AT1G16530.1	Thale cress	mitochondrion	46.15	50.91
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	45.05	50.62
Bra026716.1-P	Field mustard	mitochondrion	45.6	50.61
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	46.15	49.7
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	43.96	49.38
EER93717	Sorghum	plastid	54.95	48.31
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	42.86	47.85
Zm00001d033466_P001	Maize	plastid	53.85	46.45
GSMUA_AchrUn_...	Banana	plastid	37.91	37.5
GSMUA_Achr7P15500_001	Banana	nucleus	40.11	37.24
GSMUA_Achr6P33070_001	Banana	plastid	40.11	37.24
GSMUA_Achr4P16790_001	Banana	plastid	37.91	36.32
GSMUA_Achr7P22200_001	Banana	nucleus	41.21	35.55
GSMUA_Achr9P04330_001	Banana	plastid	34.62	35.39
GSMUA_Achr11P...	Banana	cytosol	41.76	35.02
GSMUA_Achr5P07460_001	Banana	nucleus	39.56	34.45
GSMUA_Achr8P09700_001	Banana	cytosol	37.91	33.82
TraesCS4D01G014600.1	Wheat	nucleus	51.1	31.63
GSMUA_Achr10P...	Banana	plastid	41.21	30.0
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	36.81	28.63
GSMUA_Achr6P04670_001	Banana	mitochondrion	36.26	22.92
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.67	17.94

Protein Annotations

EnsemblPlants:GSMUA_Achr4P32000_001	EnsemblPlants:GSMUA_Achr4T32000_001	EnsemblPlantsGene:GSMUA_Achr4G32000_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF58	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029511A3
UniProt:M0STW2	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G32000_001]

Coordinates

chr4:-:28960899..28961796

Molecular Weight (calculated)

19819.9 Da

IEP (calculated)

9.130

GRAVY (calculated)

-0.188

Length

182 amino acids

Sequence
(BLAST)

001: MKGEGRKHTT ASPCAACKLL RRRCTQGCVF APHFPADEPQ KFASVHKVFG ASNVSKLLRE IAAQHRGDAV SSLVYEANAR VRDPVYGCVG AITSLHCQIQ
101: ALQAQLAVAR AKMLHLRMSH AAYLARFSHT AMATASTSYT GSSSMSPEHK QLMEPDTTKS VFPLDMAMLD QSNLGEPQIW SC

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.