Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 4
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G016200.1 | Wheat | plastid | 97.11 | 96.0 |
HORVU4Hr1G002480.2 | Barley | cytosol | 90.75 | 88.2 |
Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 71.1 | 61.81 |
EER93717 | Sorghum | plastid | 69.94 | 58.45 |
KRH50484 | Soybean | cytosol, nucleus, plastid | 52.6 | 57.23 |
PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 53.18 | 57.14 |
Solyc02g069440.2.1 | Tomato | nucleus | 52.6 | 56.52 |
KRG89441 | Soybean | cytosol, nucleus, plastid | 53.18 | 56.1 |
Zm00001d033466_P001 | Maize | plastid | 68.21 | 55.92 |
Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 54.91 | 55.56 |
PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 54.91 | 55.56 |
VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 54.34 | 55.29 |
KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 53.76 | 54.71 |
VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 54.91 | 54.29 |
KRH43747 | Soybean | mitochondrion | 55.49 | 54.24 |
KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 53.18 | 54.12 |
GSMUA_Achr5P02190_001 | Banana | mitochondrion | 51.45 | 53.61 |
TraesCS4D01G014600.1 | Wheat | nucleus | 90.75 | 53.4 |
GSMUA_Achr2P13170_001 | Banana | nucleus | 53.18 | 52.87 |
KRH13706 | Soybean | mitochondrion | 54.34 | 52.81 |
CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 52.02 | 52.33 |
Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 52.02 | 52.33 |
CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 51.45 | 51.74 |
AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 51.45 | 51.74 |
GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 53.18 | 50.55 |
CDY40054 | Canola | mitochondrion | 47.4 | 50.31 |
GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 53.76 | 50.0 |
CDY66794 | Canola | mitochondrion | 46.82 | 49.69 |
Bra026042.1-P | Field mustard | mitochondrion | 46.82 | 49.69 |
Solyc12g100150.1.1 | Tomato | mitochondrion | 47.98 | 49.4 |
CDX81767 | Canola | cytosol, nucleus, plastid | 46.82 | 49.39 |
PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 47.98 | 49.11 |
CDY50999 | Canola | cytosol, mitochondrion, plastid | 46.24 | 48.78 |
Bra026716.1-P | Field mustard | mitochondrion | 45.66 | 48.17 |
AT1G16530.1 | Thale cress | mitochondrion | 45.66 | 47.88 |
TraesCS5A01G152200.1 | Wheat | plastid | 46.24 | 45.2 |
TraesCS1A01G222300.1 | Wheat | mitochondrion | 45.66 | 41.8 |
TraesCS1A01G062200.1 | Wheat | cytosol, plastid | 42.77 | 35.92 |
TraesCS1A01G111700.1 | Wheat | nucleus | 41.62 | 30.38 |
TraesCS3A01G093200.1 | Wheat | plastid | 43.35 | 29.18 |
TraesCS3A01G346300.1 | Wheat | cytosol | 40.46 | 28.0 |
TraesCS4A01G107300.1 | Wheat | plastid | 35.84 | 27.8 |
TraesCS3A01G402300.1 | Wheat | plastid | 36.99 | 24.71 |
TraesCS1A01G260000.1 | Wheat | plastid | 36.99 | 24.24 |
TraesCS4A01G235100.1 | Wheat | nucleus | 37.57 | 22.57 |
Protein Annotations
EnsemblPlants:TraesCS4A01G297500.1 | EnsemblPlantsGene:TraesCS4A01G297500 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr4A:-:596770660..596773730
Molecular Weight (calculated)
18460.0 Da
IEP (calculated)
8.137
GRAVY (calculated)
-0.166
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVAAAGAG VSPCAACKLL RRRCSPGCVF APYFPSGEPH RFASVHKVFG ASNISKLLQE IPAEHRGDTV SSLVYEANAR VRDPIYGCVG AITSLQRQVE
101: SLQTQLALAQ AEMVRLRMAN AYGAARHNGG GSTASGSPSS MSSPTKTADH HDMAVDQSGV MELELECSRF WAY
101: SLQTQLALAQ AEMVRLRMAN AYGAARHNGG GSTASGSPSS MSSPTKTADH HDMAVDQSGV MELELECSRF WAY
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.