CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026042.1-P	Field mustard	mitochondrion	98.77	98.77
CDY66794	Canola	mitochondrion	98.77	98.77
CDY50999	Canola	cytosol, mitochondrion, plastid	83.44	82.93
CDX81767	Canola	cytosol, nucleus, plastid	82.82	82.32
AT1G16530.1	Thale cress	mitochondrion	80.37	79.39
CDY51008	Canola	mitochondrion	50.31	58.99
CDY72536	Canola	mitochondrion	49.08	57.97
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	58.28	55.56
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	57.67	55.29
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	57.67	54.97
KRH43747	Soybean	mitochondrion	58.28	53.67
CDY49773	Canola	plastid	42.94	53.03
CDY13730	Canola	plastid	42.94	53.03
CDX83724	Canola	plastid	42.94	53.03
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	55.83	52.91
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	55.83	52.91
CDY20041	Canola	plastid	42.33	52.67
CDY03987	Canola	plastid	42.33	52.27
KRH13706	Soybean	mitochondrion	56.44	51.69
Solyc12g100150.1.1	Tomato	mitochondrion	50.92	49.4
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	50.92	49.11
GSMUA_Achr5P02190_001	Banana	mitochondrion	49.69	48.8
TraesCS4B01G016200.1	Wheat	plastid	51.53	48.0
HORVU4Hr1G002480.2	Barley	cytosol	52.15	47.75
GSMUA_Achr2P13170_001	Banana	nucleus	50.92	47.7
TraesCS4A01G297500.1	Wheat	plastid	50.31	47.4
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	53.37	46.77
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	52.15	46.7
CDY10714	Canola	mitochondrion	50.31	43.39
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	52.76	43.22
CDY16738	Canola	plastid	46.63	43.18
CDY48125	Canola	plastid	46.63	43.18
CDY24027	Canola	mitochondrion	49.69	43.09
EER93717	Sorghum	plastid	53.37	42.03
CDY69697	Canola	plastid	46.63	41.99
CDY68853	Canola	plastid	46.01	41.44
Zm00001d033466_P001	Maize	plastid	50.31	38.86
CDY06285	Canola	nucleus, plastid	41.72	35.79
CDY22713	Canola	plastid	41.72	35.6
CDY23903	Canola	plastid	42.94	35.35
CDY67958	Canola	plastid	42.94	35.35
CDY46781	Canola	nucleus, plastid	43.56	35.15
CDY16414	Canola	nucleus, plastid	43.56	35.15
CDY06988	Canola	plastid	41.1	33.33
CDX77182	Canola	plastid	42.94	32.26
CDY15755	Canola	plastid	42.94	32.26
CDY04570	Canola	plastid	42.94	32.11
CDY31207	Canola	plastid	42.33	31.94
CDY62454	Canola	plastid	42.33	31.8
CDX93609	Canola	nucleus	43.56	31.56
CDX93178	Canola	cytosol, nucleus, plastid	43.56	31.28
CDX95115	Canola	plastid	43.56	31.14
CDX83290	Canola	plastid	42.94	30.3
CDY24903	Canola	mitochondrion	42.33	29.87
CDY07604	Canola	mitochondrion	41.72	29.31
CDY02059	Canola	mitochondrion	41.1	28.39
CDY10726	Canola	mitochondrion	41.1	28.39
TraesCS4D01G014600.1	Wheat	nucleus	50.92	28.23
CDX89590	Canola	mitochondrion, nucleus	43.56	23.05
CDX68120	Canola	mitochondrion, nucleus	43.56	23.05
CDY49845	Canola	nucleus, plastid	43.56	22.76
CDY52150	Canola	nucleus, plastid	43.56	22.47
CDY12784	Canola	nucleus, plastid	42.33	20.54
CDY18621	Canola	nucleus, plastid	38.04	20.46
CDY01457	Canola	nucleus, plastid	42.33	20.41
CDX81360	Canola	plastid	40.49	19.7

Protein Annotations

EnsemblPlants:CDY40054	EnsemblPlantsGene:GSBRNA2T00068959001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY40054	ProteinID:CDY40054.1	SEG:seg
UniParc:UPI0004EE9F9B	UniProt:A0A078HS02	MapMan:15.5.24	:	:	:

Description

BnaC05g12610DBnaC05g12610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS02]

Coordinates

chrLK032462:+:295278..297912

Molecular Weight (calculated)

18035.6 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.168

Length

163 amino acids

Sequence
(BLAST)

001: MRRNGHSHGA VSPCAACKLL RRKCVEDCVF APYFPAKEPY KFAIVHKIFG ASNVSKMLQV LSENHRSDAV NSIVYEANAR VQDPVYGCVG IISSLQRQLE
101: TLQTQLAFAQ AELVHMKTLH RIDTKPPPYM ASGISFPANK DLSNDVDMAF AYENGAGESL WSC

Best Arabidopsis Sequence Match ( AT1G16530.1 )
(BLAST)

001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC

Arabidopsis Description

LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.