Factsheet for PGSC0003DMT400022286

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	98.25	98.25
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	78.95	79.41
KRH43747	Soybean	mitochondrion	77.78	75.14
KRH13706	Soybean	mitochondrion	76.02	73.03
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	64.91	68.94
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	63.16	63.91
Bra026042.1-P	Field mustard	mitochondrion	55.56	58.28
CDY66794	Canola	mitochondrion	55.56	58.28
CDX81767	Canola	cytosol, nucleus, plastid	55.56	57.93
CDY40054	Canola	mitochondrion	54.97	57.67
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	59.65	56.04
GSMUA_Achr5P02190_001	Banana	mitochondrion	54.39	56.02
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	60.82	55.91
AT1G16530.1	Thale cress	mitochondrion	53.8	55.76
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	56.14	55.49
Bra026716.1-P	Field mustard	mitochondrion	53.22	55.49
TraesCS4B01G016200.1	Wheat	plastid	56.73	55.43
TraesCS4A01G297500.1	Wheat	plastid	55.56	54.91
CDY50999	Canola	cytosol, mitochondrion, plastid	52.63	54.88
GSMUA_Achr2P13170_001	Banana	nucleus	55.56	54.6
HORVU4Hr1G002480.2	Barley	cytosol	56.14	53.93
PGSC0003DMT400061511	Potato	mitochondrion	51.46	51.46
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	59.06	50.75
EER93717	Sorghum	plastid	59.65	49.28
Zm00001d033466_P001	Maize	plastid	58.48	47.39
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	43.86	43.35
PGSC0003DMT400032875	Potato	plastid	38.6	42.04
PGSC0003DMT400038248	Potato	nucleus	30.99	41.41
PGSC0003DMT400017805	Potato	plastid	40.35	41.07
PGSC0003DMT400019410	Potato	plastid	46.2	39.9
PGSC0003DMT400065346	Potato	plastid	48.54	39.71
PGSC0003DMT400046644	Potato	nucleus, plastid	42.69	38.22
PGSC0003DMT400069646	Potato	plastid	38.6	37.71
PGSC0003DMT400002549	Potato	plastid	40.94	37.04
PGSC0003DMT400065297	Potato	plastid	46.2	36.57
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	46.78	36.04
PGSC0003DMT400052995	Potato	plastid	39.77	33.83
TraesCS4D01G014600.1	Wheat	nucleus	56.14	32.65
PGSC0003DMT400074783	Potato	mitochondrion	45.61	28.47
PGSC0003DMT400002013	Potato	nucleus	40.94	24.39
PGSC0003DMT400002011	Potato	nucleus	39.77	23.61
PGSC0003DMT400025959	Potato	nucleus	42.11	23.0
PGSC0003DMT400041848	Potato	nucleus	1.17	2.53
PGSC0003DMT400008972	Potato	cytosol	1.17	1.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400022286	EnsemblPlantsGene:PGSC0003DMG400008649	EntrezGene:102583601	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF58	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400008649	RefSeq:XP_006364248.1
UniParc:UPI000296B6B2	UniProt:M1AGH3	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008649]

Coordinates

chr11:+:33333751..33337329

Molecular Weight (calculated)

18697.2 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.371

Length

171 amino acids

Sequence
(BLAST)

001: MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPH KFASVHKVFG ASNVNKMLQE LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: NLQSQLAIAQ AEVVHMRMRQ FSSMSGGGTA GNSPENVSPS SRHTQTQPTM SLFTMDMVVD QANIEESLWS C

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.