CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026716.1-P	Field mustard	mitochondrion	95.73	95.73
CDX81767	Canola	cytosol, nucleus, plastid	90.24	90.24
CDY66794	Canola	mitochondrion	83.54	84.05
CDY40054	Canola	mitochondrion	82.93	83.44
AT1G16530.1	Thale cress	mitochondrion	79.88	79.39
CDY51008	Canola	mitochondrion	50.0	58.99
CDY72536	Canola	mitochondrion	49.39	58.7
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.1	54.12
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	55.49	53.22
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	55.49	52.91
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	55.49	52.91
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	54.88	52.63
CDX83724	Canola	plastid	42.07	52.27
CDY13730	Canola	plastid	42.07	52.27
CDY49773	Canola	plastid	42.07	52.27
CDY20041	Canola	plastid	41.46	51.91
CDY03987	Canola	plastid	41.46	51.52
KRH43747	Soybean	mitochondrion	54.27	50.28
GSMUA_Achr5P02190_001	Banana	mitochondrion	50.61	50.0
KRH13706	Soybean	mitochondrion	53.05	48.88
Solyc12g100150.1.1	Tomato	mitochondrion	50.0	48.81
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	49.39	47.93
GSMUA_Achr2P13170_001	Banana	nucleus	50.0	47.13
TraesCS4B01G016200.1	Wheat	plastid	50.0	46.86
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	53.05	46.77
HORVU4Hr1G002480.2	Barley	cytosol	50.61	46.63
TraesCS4A01G297500.1	Wheat	plastid	48.78	46.24
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	51.22	46.15
CDY10714	Canola	mitochondrion	51.22	44.44
CDY24027	Canola	mitochondrion	50.0	43.62
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.83	42.71
EER93717	Sorghum	plastid	53.05	42.03
CDY16738	Canola	plastid	44.51	41.48
CDY48125	Canola	plastid	44.51	41.48
CDY69697	Canola	plastid	45.12	40.88
CDY68853	Canola	plastid	44.51	40.33
Zm00001d033466_P001	Maize	plastid	48.78	37.91
CDY23903	Canola	plastid	42.07	34.85
CDY67958	Canola	plastid	42.07	34.85
CDY06285	Canola	nucleus, plastid	39.63	34.21
CDY46781	Canola	nucleus, plastid	42.07	34.16
CDY16414	Canola	nucleus, plastid	42.07	34.16
CDY22713	Canola	plastid	39.63	34.03
CDY06988	Canola	plastid	40.24	32.84
CDY15755	Canola	plastid	40.85	30.88
CDX77182	Canola	plastid	40.85	30.88
CDX93178	Canola	cytosol, nucleus, plastid	42.68	30.84
CDY04570	Canola	plastid	40.85	30.73
CDY62454	Canola	plastid	40.24	30.41
CDY31207	Canola	plastid	39.63	30.09
CDY24903	Canola	mitochondrion	42.07	29.87
CDX93609	Canola	nucleus	40.85	29.78
CDX95115	Canola	plastid	40.85	29.39
CDX83290	Canola	plastid	40.85	29.0
CDY07604	Canola	mitochondrion	40.85	28.88
CDY10726	Canola	mitochondrion	40.24	27.97
CDY02059	Canola	mitochondrion	40.24	27.97
TraesCS4D01G014600.1	Wheat	nucleus	50.0	27.89
CDX68120	Canola	mitochondrion, nucleus	42.68	22.73
CDX89590	Canola	mitochondrion, nucleus	42.68	22.73
CDY49845	Canola	nucleus, plastid	42.07	22.12
CDY52150	Canola	nucleus, plastid	42.07	21.84
CDY12784	Canola	nucleus, plastid	40.85	19.94
CDY01457	Canola	nucleus, plastid	40.85	19.82
CDY18621	Canola	nucleus, plastid	36.59	19.8
CDX81360	Canola	plastid	39.02	19.1

Protein Annotations

EnsemblPlants:CDY50999	EnsemblPlantsGene:GSBRNA2T00097976001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY50999	ProteinID:CDY50999.1	UniParc:UPI0004EDDEB7
UniProt:A0A078INJ5	MapMan:15.5.24	:	:	:	:

Description

BnaA09g56280DBnaA09g56280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INJ5]

Coordinates

chrLK032955:+:53592..57322

Molecular Weight (calculated)

18267.0 Da

IEP (calculated)

9.263

GRAVY (calculated)

-0.210

Length

164 amino acids

Sequence
(BLAST)

001: MRQKGHRHGG AVSPCAGCKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GASNVKKMLQ VLSGNHRSDA VNSLVYEANA RVQDPVYGCV GTISSLHRQL
101: ETLQTQLAFS QAELVHLKTL HHVDTRSPPY MASSITFPTI KDFSSDVNMT FMYDNSAGES LWSC

Best Arabidopsis Sequence Match ( AT1G16530.1 )
(BLAST)

001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC

Arabidopsis Description

LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.