Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67958 | Canola | plastid | 98.99 | 98.99 |
| CDY06988 | Canola | plastid | 89.39 | 88.06 |
| Bra004572.1-P | Field mustard | cytosol, mitochondrion, nucleus | 98.99 | 87.89 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 91.41 | 80.8 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 91.41 | 79.74 |
| CDY07604 | Canola | mitochondrion | 90.4 | 77.16 |
| CDY24903 | Canola | mitochondrion | 88.89 | 76.19 |
| KRH53776 | Soybean | nucleus | 73.23 | 65.32 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 73.74 | 65.18 |
| KRH64170 | Soybean | nucleus | 72.22 | 64.41 |
| Solyc06g050430.2.1 | Tomato | nucleus | 67.17 | 61.29 |
| CDY72536 | Canola | mitochondrion | 38.89 | 55.8 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 63.64 | 55.02 |
| CDY51008 | Canola | mitochondrion | 38.38 | 54.68 |
| CDX83724 | Canola | plastid | 35.35 | 53.03 |
| CDY13730 | Canola | plastid | 35.35 | 53.03 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 66.67 | 53.01 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 66.67 | 52.17 |
| CDY20041 | Canola | plastid | 34.34 | 51.91 |
| CDY02059 | Canola | mitochondrion | 61.62 | 51.69 |
| CDY10726 | Canola | mitochondrion | 61.11 | 51.27 |
| CDY03987 | Canola | plastid | 33.84 | 50.76 |
| CDY49773 | Canola | plastid | 33.84 | 50.76 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 64.14 | 46.35 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 39.39 | 45.35 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.89 | 44.77 |
| CDY40054 | Canola | mitochondrion | 35.35 | 42.94 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 35.35 | 42.68 |
| CDY66794 | Canola | mitochondrion | 34.85 | 42.33 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 34.85 | 42.07 |
| CDY24027 | Canola | mitochondrion | 39.9 | 42.02 |
| CDY10714 | Canola | mitochondrion | 39.9 | 41.8 |
| CDY16738 | Canola | plastid | 35.86 | 40.34 |
| CDY48125 | Canola | plastid | 35.86 | 40.34 |
| CDY69697 | Canola | plastid | 35.35 | 38.67 |
| CDY68853 | Canola | plastid | 35.35 | 38.67 |
| CDY46781 | Canola | nucleus, plastid | 35.86 | 35.15 |
| CDY16414 | Canola | nucleus, plastid | 35.86 | 35.15 |
| CDY06285 | Canola | nucleus, plastid | 33.33 | 34.74 |
| CDY22713 | Canola | plastid | 33.33 | 34.55 |
| CDY04570 | Canola | plastid | 35.35 | 32.11 |
| CDY15755 | Canola | plastid | 34.34 | 31.34 |
| CDX77182 | Canola | plastid | 33.84 | 30.88 |
| CDY62454 | Canola | plastid | 33.84 | 30.88 |
| CDY31207 | Canola | plastid | 32.32 | 29.63 |
| CDX93609 | Canola | nucleus | 32.32 | 28.44 |
| CDX95115 | Canola | plastid | 32.32 | 28.07 |
| CDX83290 | Canola | plastid | 32.32 | 27.71 |
| CDX89590 | Canola | mitochondrion, nucleus | 35.35 | 22.73 |
| CDX68120 | Canola | mitochondrion, nucleus | 35.35 | 22.73 |
| CDY49845 | Canola | nucleus, plastid | 34.85 | 22.12 |
| CDY52150 | Canola | nucleus, plastid | 34.85 | 21.84 |
| CDY12784 | Canola | nucleus, plastid | 34.34 | 20.24 |
| CDY01457 | Canola | nucleus, plastid | 34.34 | 20.12 |
| CDX81360 | Canola | plastid | 33.84 | 20.0 |
| CDY18621 | Canola | nucleus, plastid | 30.3 | 19.8 |
Protein Annotations
| EnsemblPlants:CDY23903 | EnsemblPlantsGene:GSBRNA2T00024342001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY23903 | ProteinID:CDY23903.1 | SEG:seg |
| UniParc:UPI0004EEC387 | UniProt:A0A078GGX9 | MapMan:15.5.24 | : | : | : |
Description
BnaC04g01340DBnaC04g01340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGX9]
Coordinates
chrLK032150:+:575004..575776
Molecular Weight (calculated)
21382.5 Da
IEP (calculated)
8.278
GRAVY (calculated)
-0.258
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIRRHISG PPGALNTITP CAACKLLRRR CAQECPFSPY FSPCEPLKFA SVHKVFGASN VSKMLMEVPE GQRADAANSL VYEANVRLRD PVYGCMGAIS
101: ALQQQVQALQ AELTAVRSEI LKYKQREAVA TLIVPSNSQY HNSGGVSVIA LPPQTPSTPP QPTAAHHPPP PSSCVYSQPT TRALEYGEIE SENNSYFG
101: ALQQQVQALQ AELTAVRSEI LKYKQREAVA TLIVPSNSQY HNSGGVSVIA LPPQTPSTPP QPTAAHHPPP PSSCVYSQPT TRALEYGEIE SENNSYFG
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.