Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06988 | Canola | plastid | 84.58 | 95.52 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 93.39 | 94.64 |
| CDY67958 | Canola | plastid | 80.18 | 91.92 |
| CDY23903 | Canola | plastid | 79.74 | 91.41 |
| CDY07604 | Canola | mitochondrion | 88.55 | 86.64 |
| CDY24903 | Canola | mitochondrion | 87.67 | 86.15 |
| KRH53776 | Soybean | nucleus | 71.81 | 73.42 |
| VIT_13s0067g02380.t01 | Wine grape | nucleus | 71.81 | 72.77 |
| KRH64170 | Soybean | nucleus | 70.93 | 72.52 |
| Solyc06g050430.2.1 | Tomato | nucleus | 67.4 | 70.51 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 64.32 | 63.76 |
| CDY72536 | Canola | mitochondrion | 34.36 | 56.52 |
| CDY51008 | Canola | mitochondrion | 33.92 | 55.4 |
| CDY13730 | Canola | plastid | 31.72 | 54.55 |
| CDX83724 | Canola | plastid | 31.72 | 54.55 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 59.47 | 54.22 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 60.35 | 54.15 |
| CDY20041 | Canola | plastid | 30.4 | 52.67 |
| CDY49773 | Canola | plastid | 30.4 | 52.27 |
| CDY02059 | Canola | mitochondrion | 53.74 | 51.69 |
| CDY03987 | Canola | plastid | 29.96 | 51.52 |
| CDY10726 | Canola | mitochondrion | 53.3 | 51.27 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 55.95 | 46.35 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.8 | 45.93 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 34.36 | 45.35 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 31.72 | 43.9 |
| CDY40054 | Canola | mitochondrion | 31.28 | 43.56 |
| CDY66794 | Canola | mitochondrion | 31.28 | 43.56 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 30.84 | 42.68 |
| CDY24027 | Canola | mitochondrion | 35.24 | 42.55 |
| CDY10714 | Canola | mitochondrion | 35.24 | 42.33 |
| CDY48125 | Canola | plastid | 32.16 | 41.48 |
| CDY16738 | Canola | plastid | 32.16 | 41.48 |
| CDY69697 | Canola | plastid | 31.72 | 39.78 |
| CDY68853 | Canola | plastid | 31.72 | 39.78 |
| CDY46781 | Canola | nucleus, plastid | 32.16 | 36.14 |
| CDY16414 | Canola | nucleus, plastid | 32.16 | 36.14 |
| CDY06285 | Canola | nucleus, plastid | 29.96 | 35.79 |
| CDY22713 | Canola | plastid | 29.96 | 35.6 |
| CDY04570 | Canola | plastid | 31.28 | 32.57 |
| CDY15755 | Canola | plastid | 30.4 | 31.8 |
| CDY62454 | Canola | plastid | 29.96 | 31.34 |
| CDX77182 | Canola | plastid | 29.96 | 31.34 |
| CDY31207 | Canola | plastid | 29.07 | 30.56 |
| CDX93609 | Canola | nucleus | 29.07 | 29.33 |
| CDX83290 | Canola | plastid | 29.07 | 28.57 |
| CDX95115 | Canola | plastid | 28.63 | 28.51 |
| CDY49845 | Canola | nucleus, plastid | 32.6 | 23.72 |
| CDY52150 | Canola | nucleus, plastid | 32.6 | 23.42 |
| CDX89590 | Canola | mitochondrion, nucleus | 30.84 | 22.73 |
| CDX68120 | Canola | mitochondrion, nucleus | 30.84 | 22.73 |
| CDY12784 | Canola | nucleus, plastid | 31.72 | 21.43 |
| CDY01457 | Canola | nucleus, plastid | 31.72 | 21.3 |
| CDX81360 | Canola | plastid | 29.96 | 20.3 |
| CDY18621 | Canola | nucleus, plastid | 26.87 | 20.13 |
Protein Annotations
| EnsemblPlants:CDX93178 | EnsemblPlantsGene:GSBRNA2T00155110001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF2 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDX93178 | ProteinID:CDX93178.1 | SEG:seg |
| UniParc:UPI0004EB4B55 | MapMan:15.5.24 | : | : | : | : |
Description
BnaC04g47180D
Coordinates
chrLK031875:+:75025..76667
Molecular Weight (calculated)
24955.7 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.470
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRERERFEE IGKKIKREAD AWPHQMAGII RRPMSGPHGT LNTITPCAAC KLLRRRCAQE CPFSPYFSPH EPHKFASVHK VFGASNVSKM LMEVPENQRA
101: DAANSLVYEA NVRLRDPVYG CMGAISALQH QVQALQAELT AVRSEILKYN QREAVATLIV PSNPQVAGFH NSGGVSVIAP QPQTPSTPPQ PTAAHPPPPP
201: SSCVFSQPTT RPLEYGDIES ENNSYFG
101: DAANSLVYEA NVRLRDPVYG CMGAISALQH QVQALQAELT AVRSEILKYN QREAVATLIV PSNPQVAGFH NSGGVSVIAP QPQTPSTPPQ PTAAHPPPPP
201: SSCVFSQPTT RPLEYGDIES ENNSYFG
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.