Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | CDX74943 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX79747 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDX91374 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | CDY07778 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49845 | Canola | nucleus, plastid | 95.25 | 96.47 |
| AT5G66870.1 | Thale cress | nucleus | 76.58 | 77.32 |
| CDY01457 | Canola | nucleus, plastid | 80.7 | 75.44 |
| CDY12784 | Canola | nucleus, plastid | 79.75 | 75.0 |
| CDY20041 | Canola | plastid | 24.37 | 58.78 |
| CDY13730 | Canola | plastid | 24.37 | 58.33 |
| CDY49773 | Canola | plastid | 24.37 | 58.33 |
| CDY03987 | Canola | plastid | 24.37 | 58.33 |
| CDX83724 | Canola | plastid | 24.05 | 57.58 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 42.72 | 56.02 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 41.77 | 53.88 |
| KRH62409 | Soybean | nucleus | 35.44 | 52.83 |
| CDY72536 | Canola | mitochondrion | 22.78 | 52.17 |
| CDY51008 | Canola | mitochondrion | 22.78 | 51.8 |
| Solyc02g065150.1.1 | Tomato | nucleus | 45.89 | 49.83 |
| PGSC0003DMT400002013 | Potato | nucleus | 44.94 | 49.48 |
| CDY16738 | Canola | plastid | 27.53 | 49.43 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 44.62 | 49.13 |
| KRH53127 | Soybean | nucleus | 31.65 | 49.02 |
| PGSC0003DMT400002011 | Potato | nucleus | 44.62 | 48.96 |
| CDY48125 | Canola | plastid | 26.9 | 48.3 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 43.99 | 47.6 |
| CDY69697 | Canola | plastid | 27.22 | 47.51 |
| CDY68853 | Canola | plastid | 27.22 | 47.51 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 44.62 | 47.16 |
| KRH28509 | Soybean | nucleus | 43.35 | 44.48 |
| KRH76950 | Soybean | nucleus | 42.72 | 44.41 |
| PGSC0003DMT400025959 | Potato | nucleus | 43.35 | 43.77 |
| CDY16414 | Canola | nucleus, plastid | 27.85 | 43.56 |
| CDY46781 | Canola | nucleus, plastid | 27.85 | 43.56 |
| CDY40054 | Canola | mitochondrion | 22.47 | 43.56 |
| CDY66794 | Canola | mitochondrion | 22.47 | 43.56 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 43.04 | 43.17 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 22.15 | 42.68 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 21.84 | 42.07 |
| CDY10714 | Canola | mitochondrion | 25.0 | 41.8 |
| KRH57745 | Soybean | nucleus | 36.39 | 41.67 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.84 | 40.12 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 21.84 | 40.12 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 36.39 | 39.93 |
| CDY24027 | Canola | mitochondrion | 23.73 | 39.89 |
| CDX81360 | Canola | plastid | 41.77 | 39.4 |
| CDX68120 | Canola | mitochondrion, nucleus | 37.03 | 37.99 |
| CDX89590 | Canola | mitochondrion, nucleus | 37.03 | 37.99 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 33.54 | 37.32 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 33.54 | 37.32 |
| CDY18621 | Canola | nucleus, plastid | 35.44 | 36.96 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 33.54 | 36.81 |
| CDY22713 | Canola | plastid | 21.52 | 35.6 |
| CDY06988 | Canola | plastid | 22.47 | 35.32 |
| CDY06285 | Canola | nucleus, plastid | 21.2 | 35.26 |
| Zm00001d033335_P001 | Maize | plastid | 31.33 | 35.23 |
| CDY67958 | Canola | plastid | 21.84 | 34.85 |
| CDY23903 | Canola | plastid | 21.84 | 34.85 |
| Zm00001d013732_P001 | Maize | plastid | 32.91 | 34.78 |
| EER93817 | Sorghum | plastid | 32.59 | 34.68 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 32.91 | 34.55 |
| CDX93178 | Canola | cytosol, nucleus, plastid | 23.42 | 32.6 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 30.7 | 32.23 |
| CDY07604 | Canola | mitochondrion | 22.47 | 30.6 |
| CDY24903 | Canola | mitochondrion | 22.15 | 30.3 |
| CDY04570 | Canola | plastid | 20.89 | 30.28 |
| CDY31207 | Canola | plastid | 20.25 | 29.63 |
| CDY62454 | Canola | plastid | 20.25 | 29.49 |
| CDY15755 | Canola | plastid | 20.25 | 29.49 |
| CDX77182 | Canola | plastid | 19.94 | 29.03 |
| CDX95115 | Canola | plastid | 20.89 | 28.95 |
| CDX93609 | Canola | nucleus | 20.57 | 28.89 |
| CDX83290 | Canola | plastid | 20.57 | 28.14 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 34.49 | 27.46 |
| CDY02059 | Canola | mitochondrion | 20.25 | 27.12 |
| CDY10726 | Canola | mitochondrion | 20.25 | 27.12 |
Protein Annotations
| EnsemblPlants:CDY52150 | EnsemblPlantsGene:GSBRNA2T00004976001 | InterPro:IPR004883 | InterPro:LOB | InterPro:LOBD | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | PFAM:PF03195 | PFscan:PS50891 | PIRSF:PIRSF038155 | ProteinID:CDY52150 |
| ProteinID:CDY52150.1 | SEG:seg | UniParc:UPI0004EE41DF | UniProt:A0A078IM44 | MapMan:15.5.24 | : |
Description
BnaA02g34590DBnaA02g34590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM44]
Coordinates
chrLK033060:-:2845..3795
Molecular Weight (calculated)
35053.1 Da
IEP (calculated)
7.520
GRAVY (calculated)
-0.545
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSTSSSPC AACKFLRRKC TQECVFAPYF PPDQPHKFAY VHKIFGASNV AKLLNDLASN QREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKQLQH
101: DLDNAKKELA AYVAPNAMFP MHHPQPHFMS LPPQPQQPSS ASSSASVLTQ QQQHLNLLPV LAIPTEQLLY HQQHIFEAQQ LAAVNSVSRD QLNEMFRAYG
201: GGSISPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQR HQQQSFQQLP LQTQETQTHP
301: NSKSEEGRGS IIGSSR
101: DLDNAKKELA AYVAPNAMFP MHHPQPHFMS LPPQPQQPSS ASSSASVLTQ QQQHLNLLPV LAIPTEQLLY HQQHIFEAQQ LAAVNSVSRD QLNEMFRAYG
201: GGSISPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQR HQQQSFQQLP LQTQETQTHP
301: NSKSEEGRGS IIGSSR
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.