CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99521
KRG99949
KRH49100
KRH66092

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	KRG99521	AT2G37630.1	16243907
AT5G66870.1	KRG99949	AT2G37630.1	16243907
AT5G66870.1	KRH49100	AT2G37630.1	16243907
AT5G66870.1	KRH66092	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53127	Soybean	nucleus	81.13	84.31
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	28.77	56.48
VIT_00s1247g00010.t01	Wine grape	nucleus	53.77	47.3
KRG93235	Soybean	plastid	36.32	45.83
KRH56556	Soybean	nucleus, plastid	36.32	45.29
KRH14912	Soybean	nucleus	32.55	45.1
KRH54338	Soybean	plastid	38.68	44.32
KRH73255	Soybean	mitochondrion, nucleus, plastid	32.08	44.16
VIT_07s0197g00030.t01	Wine grape	nucleus	50.47	43.67
KRG97685	Soybean	mitochondrion, nucleus	33.96	43.64
KRH63606	Soybean	plastid	37.26	43.41
KRH50484	Soybean	cytosol, nucleus, plastid	32.55	43.4
KRH03242	Soybean	nucleus, plastid	38.68	43.39
KRH07170	Soybean	plastid	36.32	42.78
KRG89441	Soybean	cytosol, nucleus, plastid	33.02	42.68
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.32	42.31
KRH76950	Soybean	nucleus	59.91	41.78
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	33.49	41.76
KRH57118	Soybean	plastid	38.68	41.62
KRG98217	Soybean	mitochondrion	33.49	41.28
KRH28509	Soybean	nucleus	59.91	41.23
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	33.02	41.18
KRH13283	Soybean	nucleus	41.04	41.04
VIT_07s0197g00020.t01	Wine grape	nucleus	56.13	40.75
KRH30173	Soybean	mitochondrion, nucleus	33.02	40.7
KRH20638	Soybean	nucleus	41.04	40.65
KRH57745	Soybean	nucleus	51.42	39.49
KRH43747	Soybean	mitochondrion	32.55	38.98
PGSC0003DMT400002013	Potato	nucleus	51.89	38.33
KRH13706	Soybean	mitochondrion	32.08	38.2
PGSC0003DMT400002011	Potato	nucleus	51.42	37.85
Solyc02g065150.1.1	Tomato	nucleus	51.89	37.8
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	53.3	37.79
KRG88909	Soybean	nucleus	37.74	37.38
AT5G66870.1	Thale cress	nucleus	55.19	37.38
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	50.47	37.28
CDY12784	Canola	nucleus, plastid	58.96	37.2
Bra012112.1-P	Field mustard	nucleus, plastid	58.96	36.98
CDY01457	Canola	nucleus, plastid	58.96	36.98
CDY49845	Canola	nucleus, plastid	53.77	36.54
KRH10407	Soybean	mitochondrion	29.25	36.05
CDY52150	Canola	nucleus, plastid	52.83	35.44
PGSC0003DMT400025959	Potato	nucleus	51.89	35.14
GSMUA_Achr6P04670_001	Banana	mitochondrion	46.7	34.38
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	50.94	34.29
KRG89044	Soybean	nucleus, plastid	31.13	32.35
EER93817	Sorghum	plastid	45.28	32.32
KRH24932	Soybean	nucleus, plastid	30.66	32.18
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	42.92	32.04
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	42.92	32.04
Zm00001d033335_P001	Maize	plastid	42.45	32.03
KRH22937	Soybean	plastid	29.25	31.31
TraesCS4A01G235100.1	Wheat	nucleus	42.45	31.25
Zm00001d013732_P001	Maize	plastid	42.92	30.43
KRH64170	Soybean	nucleus	31.13	29.73
KRH53776	Soybean	nucleus	31.13	29.73
HORVU4Hr1G013630.2	Barley	nucleus	41.98	29.57
CDX89590	Canola	mitochondrion, nucleus	42.92	29.55
CDX68120	Canola	mitochondrion, nucleus	42.92	29.55
Bra032153.1-P	Field mustard	mitochondrion, nucleus	42.92	29.55
AT2G23660.2	Thale cress	mitochondrion, nucleus	41.51	28.3
KRH34918	Soybean	plastid	29.25	27.93
KRG91848	Soybean	plastid	28.77	27.48
CDX81360	Canola	plastid	43.4	27.46
CDY18621	Canola	nucleus, plastid	39.15	27.39
KRH17149	Soybean	cytosol, mitochondrion, nucleus	32.08	27.31
KRH72805	Soybean	cytosol, mitochondrion, nucleus	31.13	26.09
GSMUA_Achr2P17160_001	Banana	mitochondrion	36.32	25.58
Os03t0612400-00	Rice	cytosol, nucleus	43.87	23.43
Bra037142.1-P	Field mustard	nucleus, plastid	42.45	22.84

Protein Annotations

EMBL:ACUP02002268	EnsemblPlants:KRH62409	EnsemblPlantsGene:GLYMA_04G106400	EntrezGene:100812543	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF63	PFAM:PF03195	PFscan:PS50891	ProteinID:KRH62408.1
ProteinID:KRH62409	ProteinID:KRH62409.1	SEG:seg	UniParc:UPI0002958B92	UniProt:K7KJC7	MapMan:15.5.24

Description

hypothetical protein

Coordinates

chr4:-:11160118..11161983

Molecular Weight (calculated)

23383.9 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.436

Length

212 amino acids

Sequence
(BLAST)

001: MSSSNSPCAA CKIQRRKCTQ ECVFAPYFPP DNPQRFAYVH KVFGASNVAK LLNELNAAQR EDAIKSLAYE AEARLRDPVY GCVGLISILQ HRLKQLQSEL
101: HRAKKELASY VGPQAMLPPP PPPPLLPPQS PRTFSLFPFK TAPTNQQDLF GFHDDGGASA SHGVLNHHLA LFSPSPAVDH AFSHPPMHSL ALPHHSHLTR
201: SPMQPRHQTD PA

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.