CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14912	Soybean	nucleus	74.55	80.39
KRH73255	Soybean	mitochondrion, nucleus, plastid	74.55	79.87
CDY51008	Canola	mitochondrion	61.21	72.66
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	70.91	72.22
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	70.91	72.22
CDY72536	Canola	mitochondrion	59.39	71.01
GSMUA_Achr10P...	Banana	mitochondrion	67.27	70.25
GSMUA_Achr10P...	Banana	mitochondrion	66.67	69.62
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	65.45	69.23
KRH30173	Soybean	mitochondrion, nucleus	72.12	69.19
KRG98217	Soybean	mitochondrion	71.52	68.6
Bra018335.1-P	Field mustard	mitochondrion	66.67	58.2
CDY10714	Canola	mitochondrion	66.67	58.2
KRH50484	Soybean	cytosol, nucleus, plastid	55.15	57.23
AT2G30130.1	Thale cress	mitochondrion, nucleus	66.67	56.99
Bra021612.1-P	Field mustard	nucleus	65.45	56.84
CDY24027	Canola	mitochondrion	64.24	56.38
Bra022780.1-P	Field mustard	mitochondrion, nucleus	64.24	56.38
KRG89441	Soybean	cytosol, nucleus, plastid	55.76	56.1
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	35.15	53.7
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	55.15	53.53
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	54.55	52.94
KRH43747	Soybean	mitochondrion	55.15	51.41
KRH13706	Soybean	mitochondrion	55.15	51.12
KRH56556	Soybean	nucleus, plastid	47.27	45.88
KRG93235	Soybean	plastid	46.67	45.83
KRH10407	Soybean	mitochondrion	46.06	44.19
KRH63606	Soybean	plastid	47.88	43.41
KRH54338	Soybean	plastid	47.88	42.7
KRH03242	Soybean	nucleus, plastid	47.88	41.8
KRH07170	Soybean	plastid	45.45	41.67
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	44.85	40.66
KRH57118	Soybean	plastid	47.88	40.1
KRH22937	Soybean	plastid	46.67	38.89
KRH24932	Soybean	nucleus, plastid	46.67	38.12
KRG89044	Soybean	nucleus, plastid	46.67	37.75
KRH34918	Soybean	plastid	49.09	36.49
KRG91848	Soybean	plastid	49.09	36.49
KRH53776	Soybean	nucleus	49.09	36.49
KRH64170	Soybean	nucleus	47.27	35.14
KRH20638	Soybean	nucleus	45.45	35.05
KRH13283	Soybean	nucleus	44.85	34.91
KRH62409	Soybean	nucleus	43.64	33.96
KRG88909	Soybean	nucleus	41.82	32.24
KRH17149	Soybean	cytosol, mitochondrion, nucleus	46.67	30.92
KRH53127	Soybean	nucleus	38.18	30.88
KRH72805	Soybean	cytosol, mitochondrion, nucleus	47.27	30.83
KRH57745	Soybean	nucleus	47.88	28.62
KRH76950	Soybean	nucleus	44.85	24.34
KRH28509	Soybean	nucleus	44.85	24.03

Protein Annotations

EMBL:ACUP02010808	EnsemblPlants:KRG97685	EnsemblPlantsGene:GLYMA_18G024400	EntrezGene:100805733	InterPro:IPR004883	InterPro:LOB
ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF61	PFAM:PF03195	PFscan:PS50891	ProteinID:KRG97685
ProteinID:KRG97685.1	UniParc:UPI000233F27B	UniProt:I1MYZ7	MapMan:15.5.24	:	:

Description

hypothetical protein

Coordinates

chr18:-:1810774..1811757

Molecular Weight (calculated)

18472.1 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.279

Length

165 amino acids

Sequence
(BLAST)

001: MAGNSPCASC KLLRRRCTKD CIFAPYFPSN DPQKFALVHK VFGASNVSKM LQELPAHQRG DAVSSLVYEA HARVRDPVYG CVGAISHLQN QVSELQMQLA
101: VAQAEILCIQ MQQEPLMPNP EMEDPDQKSY LLQNELPQYL NYASSSNVIY DSFSRESIFG HDMVS

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.