Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66870.1 | KRG99521 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | KRG99949 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | KRH49100 | AT2G37630.1 | 16243907 |
| AT5G66870.1 | KRH66092 | AT2G37630.1 | 16243907 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76950 | Soybean | nucleus | 93.18 | 94.41 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 47.4 | 60.58 |
| KRH62409 | Soybean | nucleus | 41.23 | 59.91 |
| KRH76093 | Soybean | cytosol, endoplasmic reticulum, nucleus | 20.78 | 59.26 |
| KRH53127 | Soybean | nucleus | 38.64 | 58.33 |
| Solyc02g065150.1.1 | Tomato | nucleus | 51.95 | 54.98 |
| PGSC0003DMT400002013 | Potato | nucleus | 50.65 | 54.36 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 43.18 | 54.29 |
| PGSC0003DMT400002011 | Potato | nucleus | 50.0 | 53.47 |
| KRH57745 | Soybean | nucleus | 47.08 | 52.54 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 49.35 | 52.05 |
| KRG93235 | Soybean | plastid | 28.25 | 51.79 |
| KRH56556 | Soybean | nucleus, plastid | 28.25 | 51.18 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.4 | 50.87 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 49.35 | 50.84 |
| PGSC0003DMT400025959 | Potato | nucleus | 49.68 | 48.88 |
| KRH14912 | Soybean | nucleus | 23.7 | 47.71 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 48.38 | 47.3 |
| KRH54338 | Soybean | plastid | 28.25 | 47.03 |
| AT5G66870.1 | Thale cress | nucleus | 47.73 | 46.96 |
| KRH07170 | Soybean | plastid | 27.27 | 46.67 |
| KRH63606 | Soybean | plastid | 27.27 | 46.15 |
| KRH73255 | Soybean | mitochondrion, nucleus, plastid | 23.05 | 46.1 |
| KRG94119 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 26.95 | 45.6 |
| KRH03242 | Soybean | nucleus, plastid | 27.92 | 45.5 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 23.38 | 45.28 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 24.03 | 45.12 |
| KRG97685 | Soybean | mitochondrion, nucleus | 24.03 | 44.85 |
| CDY01457 | Canola | nucleus, plastid | 48.7 | 44.38 |
| Bra012112.1-P | Field mustard | nucleus, plastid | 48.7 | 44.38 |
| CDY12784 | Canola | nucleus, plastid | 48.38 | 44.35 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 24.35 | 44.12 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 24.35 | 44.12 |
| KRH57118 | Soybean | plastid | 27.92 | 43.65 |
| KRG98217 | Soybean | mitochondrion | 24.35 | 43.6 |
| CDY49845 | Canola | nucleus, plastid | 44.16 | 43.59 |
| KRH20638 | Soybean | nucleus | 30.19 | 43.46 |
| CDY52150 | Canola | nucleus, plastid | 44.48 | 43.35 |
| KRH30173 | Soybean | mitochondrion, nucleus | 24.03 | 43.02 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 39.61 | 42.96 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 39.61 | 42.96 |
| KRH13283 | Soybean | nucleus | 29.55 | 42.92 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 39.61 | 42.36 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 39.29 | 42.01 |
| Zm00001d033335_P001 | Maize | plastid | 37.99 | 41.64 |
| EER93817 | Sorghum | plastid | 39.61 | 41.08 |
| KRH43747 | Soybean | mitochondrion | 23.38 | 40.68 |
| KRG88909 | Soybean | nucleus | 28.25 | 40.65 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 39.29 | 40.2 |
| KRH13706 | Soybean | mitochondrion | 23.05 | 39.89 |
| KRH10407 | Soybean | mitochondrion | 22.08 | 39.53 |
| Zm00001d013732_P001 | Maize | plastid | 37.01 | 38.13 |
| Bra032153.1-P | Field mustard | mitochondrion, nucleus | 37.34 | 37.34 |
| CDX68120 | Canola | mitochondrion, nucleus | 37.34 | 37.34 |
| CDX89590 | Canola | mitochondrion, nucleus | 37.34 | 37.34 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 36.69 | 36.33 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 35.06 | 35.88 |
| KRG89044 | Soybean | nucleus, plastid | 23.7 | 35.78 |
| KRH24932 | Soybean | nucleus, plastid | 23.38 | 35.64 |
| KRH22937 | Soybean | plastid | 22.4 | 34.85 |
| CDY18621 | Canola | nucleus, plastid | 34.09 | 34.65 |
| CDX81360 | Canola | plastid | 37.66 | 34.63 |
| KRH64170 | Soybean | nucleus | 24.03 | 33.33 |
| KRH53776 | Soybean | nucleus | 23.7 | 32.88 |
| Bra037142.1-P | Field mustard | nucleus, plastid | 38.64 | 30.2 |
| KRG91848 | Soybean | plastid | 20.45 | 28.38 |
| KRH34918 | Soybean | plastid | 20.45 | 28.38 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 36.04 | 27.96 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 22.4 | 27.71 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 22.4 | 27.27 |
Protein Annotations
| EMBL:ACUP02006756 | EnsemblPlants:KRH28509 | EnsemblPlantsGene:GLYMA_11G058400 | EntrezGene:100816778 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:KRH28507.1 |
| ProteinID:KRH28508.1 | ProteinID:KRH28509 | ProteinID:KRH28509.1 | SEG:seg | UniParc:UPI000233CFE9 | UniProt:K7LN93 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:4409851..4413688
Molecular Weight (calculated)
33914.9 Da
IEP (calculated)
7.398
GRAVY (calculated)
-0.576
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQRFAYV HKVFGASNVA KLLNELSAAQ RDDAVKSLAY EAEARLRDPV YGCVGLISVL QHKLRQIQVE
101: LSNAKKELAN YIGPQALQGI PAPMLQQHPN NPFPGAMYGN MPTATASVHG GQLVIRDAQP VPHHHHHHQQ QILEAQQLAA AVAAREQQEM FRSYEHQQQQ
201: EFLRFSGGGF DMGSASSAGG FSQVSPAAGS ADQLSPSLAL GSFDNAYHMQ QQPQQGEPHH HHHPHHIPLA AQLLLPPQQK QQTHHESQLP LHRQHSESEE
301: CRSVGPSC
101: LSNAKKELAN YIGPQALQGI PAPMLQQHPN NPFPGAMYGN MPTATASVHG GQLVIRDAQP VPHHHHHHQQ QILEAQQLAA AVAAREQQEM FRSYEHQQQQ
201: EFLRFSGGGF DMGSASSAGG FSQVSPAAGS ADQLSPSLAL GSFDNAYHMQ QQPQQGEPHH HHHPHHIPLA AQLLLPPQQK QQTHHESQLP LHRQHSESEE
301: CRSVGPSC
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Arabidopsis Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.