Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01457 | Canola | nucleus, plastid | 88.18 | 81.66 |
| CDY12784 | Canola | nucleus, plastid | 87.54 | 81.55 |
| Bra012112.1-P | Field mustard | nucleus, plastid | 87.86 | 81.36 |
| CDY49845 | Canola | nucleus, plastid | 79.23 | 79.49 |
| CDY52150 | Canola | nucleus, plastid | 77.32 | 76.58 |
| VIT_00s1247g00010.t01 | Wine grape | nucleus | 46.33 | 60.17 |
| KRH62409 | Soybean | nucleus | 37.38 | 55.19 |
| Solyc02g065150.1.1 | Tomato | nucleus | 50.48 | 54.3 |
| VIT_07s0197g00030.t01 | Wine grape | nucleus | 42.49 | 54.29 |
| PGSC0003DMT400002013 | Potato | nucleus | 49.52 | 54.01 |
| PGSC0003DMT400002011 | Potato | nucleus | 48.88 | 53.12 |
| VIT_07s0197g00020.t01 | Wine grape | nucleus | 48.88 | 52.4 |
| VIT_16s0022g02050.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.28 | 51.57 |
| KRH53127 | Soybean | nucleus | 32.91 | 50.49 |
| VIT_07s0197g00040.t01 | Wine grape | cytosol, nucleus, plastid | 47.28 | 49.5 |
| KRH76950 | Soybean | nucleus | 47.6 | 49.01 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 48.88 | 48.57 |
| PGSC0003DMT400025959 | Potato | nucleus | 48.56 | 48.56 |
| KRH28509 | Soybean | nucleus | 46.96 | 47.73 |
| AT1G65620.1 | Thale cress | plastid | 29.39 | 46.23 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 23.32 | 45.91 |
| AT5G63090.3 | Thale cress | plastid | 26.2 | 44.09 |
| KRH57745 | Soybean | nucleus | 38.02 | 43.12 |
| GSMUA_Achr6P04670_001 | Banana | mitochondrion | 38.98 | 42.36 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 22.36 | 40.7 |
| CDX81360 | Canola | plastid | 43.45 | 40.6 |
| CDY18621 | Canola | nucleus, plastid | 39.3 | 40.59 |
| TraesCS4B01G079900.1 | Wheat | mitochondrion, nucleus, plastid | 36.42 | 40.14 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 36.42 | 40.14 |
| AT1G16530.1 | Thale cress | mitochondrion | 21.09 | 40.0 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 24.28 | 39.38 |
| TraesCS4A01G235100.1 | Wheat | nucleus | 36.1 | 39.24 |
| Zm00001d033335_P001 | Maize | plastid | 34.19 | 38.08 |
| HORVU4Hr1G013630.2 | Barley | nucleus | 36.42 | 37.87 |
| EER93817 | Sorghum | plastid | 35.46 | 37.37 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 36.42 | 36.66 |
| AT1G07900.1 | Thale cress | plastid | 22.04 | 36.32 |
| Zm00001d013732_P001 | Maize | plastid | 34.5 | 36.12 |
| GSMUA_Achr2P17160_001 | Banana | mitochondrion | 32.59 | 33.89 |
| Bra037142.1-P | Field mustard | nucleus, plastid | 42.49 | 33.76 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 22.36 | 31.25 |
| AT2G28500.1 | Thale cress | plastid | 21.09 | 28.45 |
| Os03t0612400-00 | Rice | cytosol, nucleus | 34.82 | 27.46 |
| AT2G30340.2 | Thale cress | nucleus | 20.13 | 23.42 |
Protein Annotations
| MapMan:15.5.24 | EntrezGene:836821 | EMBL:AB164303 | EMBL:AB473834 | ProteinID:AED98273.1 | EMBL:AK228533 |
| Symbol:ASL1 | ArrayExpress:AT5G66870 | EnsemblPlantsGene:AT5G66870 | RefSeq:AT5G66870 | TAIR:AT5G66870 | RefSeq:AT5G66870-TAIR-G |
| EnsemblPlants:AT5G66870.1 | TAIR:AT5G66870.1 | Unigene:At.28843 | ProteinID:BAB08629.1 | EMBL:BT044058 | ncoils:Coil |
| GO:GO:0000003 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009954 | GO:GO:0009965 |
| GO:GO:0009987 | GO:GO:0048441 | InterPro:IPR004883 | InterPro:LOB | InterPro:LOBD | RefSeq:NP_201488.1 |
| PFAM:PF03195 | PIRSF:PIRSF038155 | PFscan:PS50891 | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF22 | UniProt:Q9FKZ3 |
| UniParc:UPI00000A16BF | SEG:seg | : | : | : | : |
Description
LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
Coordinates
chr5:+:26705785..26708741
Molecular Weight (calculated)
34525.4 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.582
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.