Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018320.1-P | Field mustard | mitochondrion | 81.78 | 93.22 |
| CDY10726 | Canola | mitochondrion | 81.78 | 93.22 |
| CDY02059 | Canola | mitochondrion | 80.67 | 91.95 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 37.17 | 60.24 |
| GSMUA_Achr11P... | Banana | cytosol | 47.58 | 58.99 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 44.24 | 56.94 |
| AT2G40470.1 | Thale cress | cytosol, nucleus, plastid | 46.84 | 56.25 |
| GSMUA_AchrUn_... | Banana | plastid | 38.29 | 55.98 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 43.49 | 55.45 |
| Zm00001d009823_P001 | Maize | plastid | 42.38 | 52.05 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 44.24 | 50.64 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 44.24 | 50.21 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 43.87 | 49.79 |
| Os05t0165450-00 | Rice | extracellular | 44.98 | 48.79 |
| Zm00001d043036_P001 | Maize | cytosol | 41.64 | 47.26 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 43.12 | 46.77 |
| Os01t0825000-01 | Rice | cytosol | 43.12 | 46.22 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 42.75 | 46.0 |
| OQU87769 | Sorghum | cytosol | 42.01 | 45.38 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 29.0 | 45.35 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 24.16 | 40.88 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 45.72 | 40.07 |
| AT1G16530.1 | Thale cress | mitochondrion | 24.54 | 40.0 |
| AT2G30130.1 | Thale cress | mitochondrion, nucleus | 28.25 | 39.38 |
| TraesCS3B01G378100.1 | Wheat | plastid | 41.64 | 38.36 |
| HORVU3Hr1G088440.1 | Barley | plastid | 43.49 | 35.45 |
| AT1G65620.1 | Thale cress | plastid | 25.28 | 34.17 |
| AT5G63090.3 | Thale cress | plastid | 23.42 | 33.87 |
| AT1G07900.1 | Thale cress | plastid | 23.42 | 33.16 |
| AT2G28500.1 | Thale cress | plastid | 26.02 | 30.17 |
| AT2G23660.2 | Thale cress | mitochondrion, nucleus | 24.16 | 20.9 |
| AT5G66870.1 | Thale cress | nucleus | 23.42 | 20.13 |
Protein Annotations
| ArrayExpress:AT2G30340 | EnsemblPlants:AT2G30340.2 | EnsemblPlantsGene:AT2G30340 | EntrezGene:817584 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ANM61674.1 |
| ProteinID:OAP08141.1 | RefSeq:AT2G30340 | RefSeq:AT2G30340-TAIR-G | RefSeq:NP_001323878.1 | SEG:seg | Symbol:LBD13 |
| TAIR:AT2G30340 | UniParc:UPI000017A6C6 | UniProt:A0A178VRU4 | UniProt:A0A1P8AYC6 | MapMan:15.5.24 | : |
Description
LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
Coordinates
chr2:-:12931172..12932828
Molecular Weight (calculated)
29118.3 Da
IEP (calculated)
8.147
GRAVY (calculated)
-0.427
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGNNREGFG EYYETVKKIK KDPAFETTTD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
101: VGESQRGDAA NSLVYEANLR LRDPIYGCMG AISALQHHIQ SLQSELTTVR TEILRHKYQE ATTITSLQNN FNSTTTTSSV SCDQHALASA ILLPPPPPPP
201: PTPRPPRLLS SQPAPPPTPP VSLPSPSMVV SSSSSSNSSA TNSMYNPPPS STAGYSNSLS SDNNVHYFD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.