Factsheet for AT3G27650.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039072.1-P	Field mustard	plastid	77.36	93.89
CDY20041	Canola	plastid	76.1	92.37
CDY13730	Canola	plastid	74.84	90.15
CDX83724	Canola	plastid	74.84	90.15
Bra025294.1-P	Field mustard	plastid	74.84	90.15
CDY49773	Canola	plastid	74.84	90.15
CDY03987	Canola	plastid	73.58	88.64
Bra033019.1-P	Field mustard	plastid	73.58	88.64
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	44.65	65.74
Solyc02g086480.1.1	Tomato	plastid	55.35	59.06
KRG93235	Soybean	plastid	62.26	58.93
KRH56556	Soybean	nucleus, plastid	62.26	58.24
PGSC0003DMT400032875	Potato	plastid	56.6	57.32
Solyc02g067800.2.1	Tomato	plastid	59.12	55.95
KRH07170	Soybean	plastid	62.26	55.0
PGSC0003DMT400017805	Potato	plastid	57.86	54.76
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	58.49	54.71
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	61.64	53.85
AT5G63090.3	Thale cress	plastid	55.97	47.85
AT1G16530.1	Thale cress	mitochondrion	43.4	41.82
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	44.65	41.28
AT1G65620.1	Thale cress	plastid	49.06	39.2
AT2G30130.1	Thale cress	mitochondrion, nucleus	42.77	35.23
Os01t0169400-01	Rice	plastid	55.35	35.06
TraesCS3A01G093200.1	Wheat	plastid	54.72	33.85
TraesCS3B01G108500.1	Wheat	plastid	54.72	33.85
TraesCS3D01G093500.1	Wheat	plastid	54.72	33.85
Zm00001d039694_P001	Maize	plastid	54.72	33.33
AT1G07900.1	Thale cress	plastid	38.99	32.63
EES00235	Sorghum	plastid	54.72	32.46
HORVU3Hr1G016690.1	Barley	plastid	54.72	31.41
AT2G40470.1	Thale cress	cytosol, nucleus, plastid	42.77	30.36
AT2G28500.1	Thale cress	plastid	40.25	27.59
AT2G30340.2	Thale cress	nucleus	40.88	24.16
AT5G66870.1	Thale cress	nucleus	45.91	23.32
AT2G23660.2	Thale cress	mitochondrion, nucleus	42.77	21.86

Protein Annotations

MapMan:15.5.24	EntrezGene:822387	UniProt:A0A178VKF4	EMBL:AB164304	EMBL:AB473836	ProteinID:AEE77348.1
EMBL:AF447892	ArrayExpress:AT3G27650	EnsemblPlantsGene:AT3G27650	RefSeq:AT3G27650	TAIR:AT3G27650	RefSeq:AT3G27650-TAIR-G
EnsemblPlants:AT3G27650.1	TAIR:AT3G27650.1	EMBL:AY088878	Unigene:At.27202	ProteinID:BAB02689.1	ncoils:Coil
GO:GO:0008150	InterPro:IPR004883	Symbol:LBD25	InterPro:LOB	RefSeq:NP_566823.1	ProteinID:OAP05553.1
PFAM:PF03195	PO:PO:0000293	PO:PO:0007611	PO:PO:0009046	PFscan:PS50891	PANTHER:PTHR31301
PANTHER:PTHR31301:SF12	UniProt:Q8L8Q3	UniParc:UPI00000A87A5	SEG:seg	:	:

Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]

Coordinates

chr3:+:10238514..10240648

Molecular Weight (calculated)

17750.4 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.387

Length

159 amino acids

Sequence
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.