Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017805 | Potato | plastid | 93.45 | 93.45 |
| Bra039072.1-P | Field mustard | plastid | 56.55 | 72.52 |
| CDY20041 | Canola | plastid | 56.55 | 72.52 |
| Solyc02g086480.1.1 | Tomato | plastid | 62.5 | 70.47 |
| CDX83724 | Canola | plastid | 55.36 | 70.45 |
| CDY49773 | Canola | plastid | 55.36 | 70.45 |
| Bra025294.1-P | Field mustard | plastid | 54.76 | 69.7 |
| CDY13730 | Canola | plastid | 54.76 | 69.7 |
| Bra033019.1-P | Field mustard | plastid | 54.17 | 68.94 |
| CDY03987 | Canola | plastid | 54.17 | 68.94 |
| KRG93235 | Soybean | plastid | 65.48 | 65.48 |
| KRH56556 | Soybean | nucleus, plastid | 66.07 | 65.29 |
| VIT_14s0066g00680.t01 | Wine grape | nucleus, plastid | 64.88 | 64.12 |
| KRH07170 | Soybean | plastid | 64.88 | 60.56 |
| KRG94119 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 64.88 | 59.89 |
| AT3G27650.1 | Thale cress | cytosol, nucleus, plastid | 55.95 | 59.12 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 58.93 | 50.51 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 50.6 | 48.85 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.36 | 45.81 |
| Os01t0169400-01 | Rice | plastid | 64.29 | 43.03 |
| Solyc02g069440.2.1 | Tomato | nucleus | 40.48 | 42.24 |
| TraesCS3D01G093500.1 | Wheat | plastid | 64.29 | 42.02 |
| TraesCS3B01G108500.1 | Wheat | plastid | 64.29 | 42.02 |
| TraesCS3A01G093200.1 | Wheat | plastid | 64.29 | 42.02 |
| Zm00001d039694_P001 | Maize | plastid | 63.69 | 41.0 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 41.67 | 40.94 |
| EES00235 | Sorghum | plastid | 63.69 | 39.93 |
| HORVU3Hr1G016690.1 | Barley | plastid | 65.48 | 39.71 |
| Solyc04g050010.1.1 | Tomato | cytosol | 38.1 | 38.79 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 39.88 | 38.51 |
| Solyc11g008830.1.1 | Tomato | plastid | 52.38 | 38.26 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 38.1 | 38.1 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 37.5 | 36.84 |
| Solyc06g005090.2.1 | Tomato | plastid | 41.67 | 35.35 |
| Solyc01g044520.1.1 | Tomato | nucleus | 35.71 | 35.09 |
| Solyc11g072470.1.1 | Tomato | plastid | 39.29 | 34.92 |
| Solyc06g050430.2.1 | Tomato | nucleus | 40.48 | 31.34 |
| Solyc06g007390.2.1 | Tomato | nucleus | 42.86 | 30.25 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 41.67 | 30.17 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 38.1 | 29.77 |
| Solyc02g065150.1.1 | Tomato | nucleus | 48.21 | 27.84 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 47.02 | 25.08 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 35.71 | 24.79 |
Protein Annotations
| EnsemblPlants:Solyc02g067800.2.1 | EnsemblPlantsGene:Solyc02g067800.2 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF12 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI0002767596 | UniProt:K4B7B2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:37911930..37913905
Molecular Weight (calculated)
18800.0 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.586
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MFIQDMSSTS NYSTPPCAAC KFLRRKCLPS CVFAPYFPPE EPIKFTTVHK VFGASNVSKL LNEIQPHQRE DAVNSLAYEA EARLKDPVYG CVGAISVLQR
101: QVLRLQKELD ATNADLMRYA NNNNNNNNNF QYGRRMVNSG YYNYSSAWNN GISGGHNNIG TDNCDGGR
101: QVLRLQKELD ATNADLMRYA NNNNNNNNNF QYGRRMVNSG YYNYSSAWNN GISGGHNNIG TDNCDGGR
001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG
Arabidopsis Description
LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.