Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 93.53 | 97.75 |
| VIT_06s0004g07790.t01 | Wine grape | cytosol | 65.95 | 66.81 |
| Solyc06g007390.2.1 | Tomato | nucleus | 68.1 | 66.39 |
| Solyc06g050430.2.1 | Tomato | nucleus | 61.64 | 65.9 |
| GSMUA_Achr11P... | Banana | cytosol | 56.9 | 60.83 |
| GSMUA_AchrUn_... | Banana | plastid | 47.84 | 60.33 |
| GSMUA_Achr5P07460_001 | Banana | nucleus | 54.31 | 60.29 |
| HORVU1Hr1G024490.1 | Barley | cytosol, mitochondrion, nucleus | 43.1 | 60.24 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 64.66 | 60.24 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 65.09 | 59.68 |
| GSMUA_Achr7P22200_001 | Banana | nucleus | 53.45 | 58.77 |
| Zm00001d009823_P001 | Maize | plastid | 47.41 | 50.23 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 50.0 | 49.36 |
| Zm00001d043036_P001 | Maize | cytosol | 50.0 | 48.95 |
| TraesCS1B01G131900.2 | Wheat | nucleus | 50.0 | 48.95 |
| TraesCS1A01G111700.1 | Wheat | nucleus | 50.0 | 48.95 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 51.29 | 47.98 |
| Solyc02g069440.2.1 | Tomato | nucleus | 33.19 | 47.83 |
| OQU87769 | Sorghum | cytosol | 51.29 | 47.79 |
| TraesCS3A01G346300.1 | Wheat | cytosol | 50.86 | 47.2 |
| Os05t0165450-00 | Rice | extracellular | 50.43 | 47.18 |
| Os01t0825000-01 | Rice | cytosol | 50.43 | 46.61 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 34.91 | 46.55 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 34.05 | 46.2 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 34.05 | 46.2 |
| Solyc02g086480.1.1 | Tomato | plastid | 28.88 | 44.97 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 30.6 | 42.26 |
| Solyc02g067800.2.1 | Tomato | plastid | 30.17 | 41.67 |
| OQU77508 | Sorghum | cytosol, nucleus, plastid | 53.88 | 40.72 |
| TraesCS3B01G378100.1 | Wheat | plastid | 50.43 | 40.07 |
| Solyc04g050010.1.1 | Tomato | cytosol | 28.02 | 39.39 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 29.31 | 39.08 |
| Solyc11g072470.1.1 | Tomato | plastid | 30.17 | 37.04 |
| HORVU3Hr1G088440.1 | Barley | plastid | 51.72 | 36.36 |
| Solyc01g044520.1.1 | Tomato | nucleus | 26.72 | 36.26 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 30.6 | 36.22 |
| Solyc06g005090.2.1 | Tomato | plastid | 29.74 | 34.85 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 30.6 | 33.02 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 28.45 | 32.51 |
| Solyc11g008830.1.1 | Tomato | plastid | 29.74 | 30.0 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 25.43 | 24.38 |
| Solyc02g065150.1.1 | Tomato | nucleus | 29.31 | 23.37 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 31.03 | 22.86 |
Protein Annotations
| EnsemblPlants:Solyc06g082430.1.1 | EnsemblPlantsGene:Solyc06g082430.1 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF28 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | UniParc:UPI00027657B7 | UniProt:K4CAA2 |
| MapMan:15.5.24 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:48246980..48248550
Molecular Weight (calculated)
25271.1 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.333
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRERERLDE MGKKLKTEID ISQLQMQQQM GRRHVLGPVG GGTTLNNVTP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN VSKLLMEVPV
101: GQRADAANSL VYEANVRLRD PVYGCMGAIS TLQQQIQNLQ VELNTIRAEI LRYKYREAAN SLIASISTSV PPELPQAPPT PPPPPPPPSV VVVSSSSSSA
201: SSTSSNLYTP ASSSVANFSA ITNNNISYFD QQ
101: GQRADAANSL VYEANVRLRD PVYGCMGAIS TLQQQIQNLQ VELNTIRAEI LRYKYREAAN SLIASISTSV PPELPQAPPT PPPPPPPPSV VVVSSSSSSA
201: SSTSSNLYTP ASSSVANFSA ITNNNISYFD QQ
001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG
Arabidopsis Description
LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.