Factsheet for TraesCS3D01G340000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G346300.1	Wheat	cytosol	97.18	96.4
TraesCS3B01G378100.1	Wheat	plastid	95.16	80.82
Zm00001d043036_P001	Maize	cytosol	68.55	71.73
Os01t0825000-01	Rice	cytosol	71.77	70.92
OQU87769	Sorghum	cytosol	70.97	70.68
HORVU3Hr1G088440.1	Barley	plastid	90.73	68.18
GSMUA_Achr11P...	Banana	cytosol	56.05	64.06
GSMUA_Achr5P07460_001	Banana	nucleus	52.02	61.72
VIT_13s0067g02380.t01	Wine grape	nucleus	55.24	61.16
GSMUA_AchrUn_...	Banana	plastid	44.76	60.33
GSMUA_Achr7P22200_001	Banana	nucleus	51.21	60.19
KRH53776	Soybean	nucleus	51.61	57.66
KRH64170	Soybean	nucleus	51.61	57.66
Solyc06g050430.2.1	Tomato	nucleus	50.0	57.14
VIT_06s0004g07790.t01	Wine grape	cytosol	51.21	55.46
TraesCS1D01G113100.1	Wheat	nucleus	50.81	53.62
Solyc06g082430.1.1	Tomato	cytosol, nucleus, plastid	47.98	51.29
PGSC0003DMT400052995	Potato	plastid	40.32	49.75
Solyc06g007390.2.1	Tomato	nucleus	47.58	49.58
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	43.95	49.1
KRH17149	Soybean	cytosol, mitochondrion, nucleus	47.18	46.99
KRH72805	Soybean	cytosol, mitochondrion, nucleus	47.58	46.64
CDY02059	Canola	mitochondrion	43.55	45.76
Bra018320.1-P	Field mustard	mitochondrion	43.15	45.34
CDY10726	Canola	mitochondrion	43.15	45.34
TraesCS5D01G157400.1	Wheat	plastid	31.05	43.5
AT2G30340.2	Thale cress	nucleus	46.77	43.12
TraesCS1D01G224000.1	Wheat	mitochondrion	30.65	40.21
PGSC0003DMT400074783	Potato	mitochondrion	43.55	39.42
TraesCS4D01G197400.1	Wheat	plastid	29.44	32.74
TraesCS2D01G008400.1	Wheat	plastid	28.23	32.56
TraesCS3D01G093500.1	Wheat	plastid	29.03	28.02
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	29.44	25.7
TraesCS3D01G397200.1	Wheat	plastid	26.61	25.48
TraesCS4D01G014600.1	Wheat	nucleus	29.03	24.49
TraesCS1D01G259900.1	Wheat	plastid	25.4	23.95

Protein Annotations

EnsemblPlants:TraesCS3D01G340000.1	EnsemblPlantsGene:TraesCS3D01G340000	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF20	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr3D:+:453629377..453630527

Molecular Weight (calculated)

26052.9 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.023

Length

248 amino acids

Sequence
(BLAST)

001: MSTERERLDE IGKKIKREPD PAAAIAGVVV AVSPTEHHGP RRLGLVGPGI GGAANIATPC AACKLLRRRC AHECPFAPYF SPHEPHKFAA VHKVFGASNV
101: SKMLLEVPEA ERADAASSLV YEANLRLRDP VYGCMGAISM LQQQVNALEA ELQAVRAEIF KHRYRQAGVG VGVANLIVDD DVSAAAAGGF MAPATSLVHT
201: ADVVSVAEAG QEVAVMPSTA TATAYAAGQP SSTDYSSLDT SEHDAYFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.