Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G016200.1 | Wheat | plastid | 54.42 | 91.43 |
| TraesCS4A01G297500.1 | Wheat | plastid | 53.4 | 90.75 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 54.08 | 89.33 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 42.18 | 62.31 |
| EER93717 | Sorghum | plastid | 41.16 | 58.45 |
| KRH50484 | Soybean | cytosol, nucleus, plastid | 31.29 | 57.86 |
| KRG89441 | Soybean | cytosol, nucleus, plastid | 31.63 | 56.71 |
| Solyc02g069440.2.1 | Tomato | nucleus | 30.95 | 56.52 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 30.95 | 56.52 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 32.65 | 56.14 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 32.65 | 56.14 |
| Zm00001d033466_P001 | Maize | plastid | 40.14 | 55.92 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 31.97 | 55.29 |
| VIT_19s0027g01120.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 31.97 | 55.29 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 32.65 | 54.86 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 31.63 | 54.71 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 30.61 | 54.22 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 31.97 | 54.02 |
| KRH43747 | Soybean | mitochondrion | 32.31 | 53.67 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.95 | 52.91 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.95 | 52.91 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 30.61 | 52.33 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.61 | 52.33 |
| KRH13706 | Soybean | mitochondrion | 31.63 | 52.25 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 32.99 | 52.15 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.63 | 51.1 |
| CDY40054 | Canola | mitochondrion | 28.23 | 50.92 |
| CDX81767 | Canola | cytosol, nucleus, plastid | 28.23 | 50.61 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 28.91 | 50.6 |
| Bra026042.1-P | Field mustard | mitochondrion | 27.89 | 50.31 |
| CDY66794 | Canola | mitochondrion | 27.89 | 50.31 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 28.91 | 50.3 |
| CDY50999 | Canola | cytosol, mitochondrion, plastid | 27.89 | 50.0 |
| Bra026716.1-P | Field mustard | mitochondrion | 27.55 | 49.39 |
| AT1G16530.1 | Thale cress | mitochondrion | 27.21 | 48.48 |
| TraesCS5D01G157400.1 | Wheat | plastid | 26.87 | 44.63 |
| TraesCS1D01G224000.1 | Wheat | mitochondrion | 27.55 | 42.86 |
| TraesCS2D01G008400.1 | Wheat | plastid | 26.19 | 35.81 |
| TraesCS1D01G113100.1 | Wheat | nucleus | 24.15 | 30.21 |
| TraesCS4D01G197400.1 | Wheat | plastid | 22.45 | 29.6 |
| TraesCS3D01G093500.1 | Wheat | plastid | 25.85 | 29.57 |
| TraesCS3D01G340000.1 | Wheat | cytosol | 24.49 | 29.03 |
| TraesCS1D01G259900.1 | Wheat | plastid | 22.45 | 25.1 |
| TraesCS3D01G397200.1 | Wheat | plastid | 21.77 | 24.71 |
| TraesCS4D01G078800.1 | Wheat | mitochondrion, nucleus, plastid | 22.45 | 23.24 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G014600.1 | EnsemblPlantsGene:TraesCS4D01G014600 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF15 | PFAM:PF03195 | PFscan:PS50891 | SEG:seg | MapMan:15.5.24 | : |
Description
No Description!
Coordinates
chr4D:+:6641807..6643703
Molecular Weight (calculated)
31817.2 Da
IEP (calculated)
8.937
GRAVY (calculated)
-0.230
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRWVGSKVM NQLTDGADKR RGTESREGPA DASCWCYVLV QPRHHPCLAN FCFLTPAKKK KKNFSLLTVG LCALQCRASS ILSKRLPLPF HDATQARPAP
101: VPYNQGGIAF AFHLPTTNLA EEEAARQGMK EAAAGVSPCA ACKLLRRRCS PGCVFAPYFP SGEPHRFASV HKVFGASNIS KLLQEIPAEH RGDAVSSLVY
201: EANARVRDPI YGCVGAITSL QRQVESLQTQ LALAQAEMVR LRMANAYGGG GSSASGSPSS MSSPTKATPD HHHMAVDQPG VMELELECSR FWSF
101: VPYNQGGIAF AFHLPTTNLA EEEAARQGMK EAAAGVSPCA ACKLLRRRCS PGCVFAPYFP SGEPHRFASV HKVFGASNIS KLLQEIPAEH RGDAVSSLVY
201: EANARVRDPI YGCVGAITSL QRQVESLQTQ LALAQAEMVR LRMANAYGGG GSSASGSPSS MSSPTKATPD HHHMAVDQPG VMELELECSR FWSF
001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
Arabidopsis Description
LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.