Factsheet for PGSC0003DMT400061283

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g100150.1.1	Tomato	mitochondrion	86.98	87.5
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	63.91	63.16
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	61.54	61.18
KRH43747	Soybean	mitochondrion	60.95	58.19
KRH13706	Soybean	mitochondrion	60.35	57.3
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	54.44	57.14
CDX81767	Canola	cytosol, nucleus, plastid	50.3	51.83
Bra026042.1-P	Field mustard	mitochondrion	49.7	51.53
CDY66794	Canola	mitochondrion	49.7	51.53
CDY40054	Canola	mitochondrion	49.11	50.92
AT1G16530.1	Thale cress	mitochondrion	49.7	50.91
Bra026716.1-P	Field mustard	mitochondrion	48.52	50.0
HORVU4Hr1G002480.2	Barley	cytosol	52.07	49.44
CDY50999	Canola	cytosol, mitochondrion, plastid	47.93	49.39
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	50.3	49.13
GSMUA_Achr5P02190_001	Banana	mitochondrion	47.93	48.8
TraesCS4B01G016200.1	Wheat	plastid	50.3	48.57
GSMUA_Achr2P13170_001	Banana	nucleus	49.7	48.28
TraesCS4A01G297500.1	Wheat	plastid	49.11	47.98
PGSC0003DMT400061511	Potato	mitochondrion	47.93	47.37
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	51.48	46.77
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.7	46.15
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.89	43.22
PGSC0003DMT400032875	Potato	plastid	39.05	42.04
EER93717	Sorghum	plastid	50.3	41.06
PGSC0003DMT400017805	Potato	plastid	40.24	40.48
Zm00001d033466_P001	Maize	plastid	49.7	39.81
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	39.65	38.73
PGSC0003DMT400046644	Potato	nucleus, plastid	42.01	37.17
PGSC0003DMT400069646	Potato	plastid	38.46	37.14
PGSC0003DMT400038248	Potato	nucleus	27.81	36.72
PGSC0003DMT400002549	Potato	plastid	40.83	36.51
PGSC0003DMT400019410	Potato	plastid	42.6	36.36
PGSC0003DMT400065346	Potato	plastid	43.79	35.41
PGSC0003DMT400052995	Potato	plastid	41.42	34.83
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	44.38	33.78
PGSC0003DMT400065297	Potato	plastid	41.42	32.41
TraesCS4D01G014600.1	Wheat	nucleus	50.3	28.91
PGSC0003DMT400074783	Potato	mitochondrion	43.2	26.64
PGSC0003DMT400002013	Potato	nucleus	43.79	25.78
PGSC0003DMT400002011	Potato	nucleus	42.6	25.0
PGSC0003DMT400025959	Potato	nucleus	42.6	23.0
PGSC0003DMT400008972	Potato	cytosol	4.14	4.73
PGSC0003DMT400041848	Potato	nucleus	1.18	2.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400061283	EnsemblPlantsGene:PGSC0003DMG402023851	EntrezGene:102580843	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF58	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG402023851	RefSeq:XP_006365826.1
UniParc:UPI00029492BC	UniProt:M1C7B3	MapMan:15.5.24	:	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402023851]

Coordinates

chr12:+:60776426..60777842

Molecular Weight (calculated)

18674.5 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.295

Length

169 amino acids

Sequence
(BLAST)

001: MKESGGRKQG ATSPCAACKL LRRRCTQHCV FSPYFPGDEP HKFASVHKVF GASNVNKMLQ ELQEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI
101: EFLHKQLAIA QAELVHMKMK QFSSMSGGAG TATNLLGNVW SPPSRPLSSE VYSGFEVYGF LQQPQINIL

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.