Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 90.58 | 88.27 |
| VIT_17s0000g09010.t01 | Wine grape | plastid | 71.2 | 73.91 |
| KRH54338 | Soybean | plastid | 70.16 | 72.43 |
| KRH63606 | Soybean | plastid | 68.06 | 71.43 |
| PGSC0003DMT400069646 | Potato | plastid | 62.83 | 68.57 |
| KRH03242 | Soybean | nucleus, plastid | 67.02 | 67.72 |
| PGSC0003DMT400032875 | Potato | plastid | 54.97 | 66.88 |
| CDY16738 | Canola | plastid | 60.21 | 65.34 |
| CDY48125 | Canola | plastid | 60.21 | 65.34 |
| KRH57118 | Soybean | plastid | 66.49 | 64.47 |
| Bra035860.1-P | Field mustard | plastid | 58.64 | 63.64 |
| CDY69697 | Canola | plastid | 60.21 | 63.54 |
| CDY68853 | Canola | plastid | 60.21 | 63.54 |
| Bra038606.1-P | Field mustard | plastid | 60.21 | 63.54 |
| AT5G63090.3 | Thale cress | plastid | 58.12 | 59.68 |
| PGSC0003DMT400017805 | Potato | plastid | 51.83 | 58.93 |
| PGSC0003DMT400002549 | Potato | plastid | 48.17 | 48.68 |
| Os01t0169400-01 | Rice | plastid | 59.69 | 45.42 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 37.17 | 44.1 |
| TraesCS3D01G093500.1 | Wheat | plastid | 58.64 | 43.58 |
| TraesCS3B01G108500.1 | Wheat | plastid | 58.64 | 43.58 |
| TraesCS3A01G093200.1 | Wheat | plastid | 58.64 | 43.58 |
| Zm00001d039694_P001 | Maize | plastid | 58.64 | 42.91 |
| PGSC0003DMT400022286 | Potato | cytosol, mitochondrion, nucleus, plastid | 38.22 | 42.69 |
| PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 38.22 | 42.2 |
| PGSC0003DMT400061283 | Potato | mitochondrion, nucleus | 37.17 | 42.01 |
| EES00235 | Sorghum | plastid | 58.64 | 41.79 |
| PGSC0003DMT400061511 | Potato | mitochondrion | 36.65 | 40.94 |
| HORVU3Hr1G016690.1 | Barley | plastid | 58.64 | 40.43 |
| PGSC0003DMT400052995 | Potato | plastid | 37.17 | 35.32 |
| PGSC0003DMT400038248 | Potato | nucleus | 23.04 | 34.38 |
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 30.89 | 34.1 |
| PGSC0003DMT400019410 | Potato | plastid | 32.98 | 31.82 |
| PGSC0003DMT400078265 | Potato | cytosol, nucleus, plastid | 36.65 | 31.53 |
| PGSC0003DMT400065346 | Potato | plastid | 34.03 | 31.1 |
| PGSC0003DMT400002013 | Potato | nucleus | 45.03 | 29.97 |
| PGSC0003DMT400065297 | Potato | plastid | 33.51 | 29.63 |
| PGSC0003DMT400002011 | Potato | nucleus | 43.98 | 29.17 |
| PGSC0003DMT400025959 | Potato | nucleus | 44.5 | 27.16 |
| PGSC0003DMT400074783 | Potato | mitochondrion | 37.17 | 25.91 |
| PGSC0003DMT400041848 | Potato | nucleus | 4.19 | 10.13 |
| PGSC0003DMT400008972 | Potato | cytosol | 3.14 | 4.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400046644 | EnsemblPlantsGene:PGSC0003DMG400018112 | EntrezGene:102604598 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF12 | PFAM:PF03195 | PFscan:PS50891 | PGSC:PGSC0003DMG400018112 | RefSeq:XP_006344452.1 |
| SEG:seg | UniParc:UPI00029650AF | UniProt:M1BJE0 | MapMan:15.5.24 | : | : |
Description
Protein LATERAL ORGAN BOUNDARIES [Source:PGSC_GENE;Acc:PGSC0003DMG400018112]
Coordinates
chr3:-:52199410..52201453
Molecular Weight (calculated)
20973.7 Da
IEP (calculated)
8.129
GRAVY (calculated)
-0.469
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSYNSP CAACKFLRRK CLPGCIFSPY FPPEEPQKFI NVHKIFGASN VTKLLNELLP HQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVERLQ
101: KELDAANADL IRYACNEFTS SPVPPLPVHH NITLRQRSVE LITRRPSGGG GGGGGGFYQT SSYPIPYSYP NWNDHQNTTG DHHGYGGGGS I
101: KELDAANADL IRYACNEFTS SPVPPLPVHH NITLRQRSVE LITRRPSGGG GGGGGGFYQT SSYPIPYSYP NWNDHQNTTG DHHGYGGGGS I
001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM
Arabidopsis Description
LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.