Factsheet for PGSC0003DMT400010597

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050010.1.1	Tomato	cytosol	91.33	95.76
AT1G07900.1	Thale cress	plastid	59.54	54.21
CDY06285	Canola	nucleus, plastid	58.96	53.68
CDY22713	Canola	plastid	58.96	53.4
PGSC0003DMT400019410	Potato	plastid	58.96	51.52
Bra018675.1-P	Field mustard	plastid	59.54	50.0
Bra031599.1-P	Field mustard	nucleus, plastid	59.54	49.76
PGSC0003DMT400065346	Potato	plastid	58.96	48.8
CDX77182	Canola	plastid	58.96	47.0
CDY62454	Canola	plastid	58.96	47.0
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	46.24	46.24
CDY04570	Canola	plastid	57.23	45.41
CDX93609	Canola	nucleus	58.96	45.33
CDY15755	Canola	plastid	56.65	45.16
Bra035698.1-P	Field mustard	plastid	59.54	44.98
CDY31207	Canola	plastid	56.07	44.91
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	41.62	44.72
CDX95115	Canola	plastid	58.38	44.3
AT2G28500.1	Thale cress	plastid	58.96	43.97
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	43.35	43.86
PGSC0003DMT400038248	Potato	nucleus	32.37	43.75
Bra000491.1-P	Field mustard	plastid	57.8	43.29
CDX83290	Canola	plastid	57.8	43.29
Bra011942.1-P	Field mustard	plastid	57.23	42.49
PGSC0003DMT400065297	Potato	plastid	52.6	42.13
PGSC0003DMT400061511	Potato	mitochondrion	41.04	41.52
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	38.73	39.65
PGSC0003DMT400017805	Potato	plastid	36.42	37.5
PGSC0003DMT400032875	Potato	plastid	33.53	36.94
PGSC0003DMT400069646	Potato	plastid	35.26	34.86
PGSC0003DMT400002549	Potato	plastid	36.99	33.86
PGSC0003DMT400052995	Potato	plastid	36.42	31.34
PGSC0003DMT400046644	Potato	nucleus, plastid	34.1	30.89
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	38.15	29.73
PGSC0003DMT400074783	Potato	mitochondrion	39.31	24.82
PGSC0003DMT400002013	Potato	nucleus	38.73	23.34
PGSC0003DMT400002011	Potato	nucleus	36.99	22.22
PGSC0003DMT400025959	Potato	nucleus	38.15	21.09
PGSC0003DMT400008972	Potato	cytosol	4.05	4.73
PGSC0003DMT400041848	Potato	nucleus	1.16	2.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400010597	EnsemblPlantsGene:PGSC0003DMG400004138	EntrezGene:102594498	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG400004138	RefSeq:XP_006340510.1
SEG:seg	UniParc:UPI000295F5C6	UniProt:M0ZYB1	MapMan:15.5.24	:	:

Description

LOB domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004138]

Coordinates

chr4:-:48045120..48046565

Molecular Weight (calculated)

19574.2 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.467

Length

173 amino acids

Sequence
(BLAST)

001: MEDKSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE VPEDQRADAV NSMVYEANAR IRDPVYGCTA IICQLQKQIS
101: ELQADLVKAQ VEIMNVQTQN TNLVALICTE MTQNQENNNS TTTESPDHQQ AYGNSNTSLE DNNVYAPWKS LWT

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.