Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010597 | Potato | cytosol, nucleus, plastid | 95.76 | 91.33 |
| Solyc05g048740.2.1 | Tomato | nucleus, plastid | 75.15 | 57.67 |
| Solyc11g072470.1.1 | Tomato | plastid | 64.24 | 56.08 |
| AT1G07900.1 | Thale cress | plastid | 63.64 | 55.26 |
| CDY22713 | Canola | plastid | 62.42 | 53.93 |
| CDY06285 | Canola | nucleus, plastid | 61.21 | 53.16 |
| Solyc06g005090.2.1 | Tomato | plastid | 61.21 | 51.01 |
| Bra018675.1-P | Field mustard | plastid | 63.03 | 50.49 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 61.82 | 49.28 |
| CDY62454 | Canola | plastid | 63.03 | 47.93 |
| CDX77182 | Canola | plastid | 61.82 | 47.0 |
| Solyc01g044520.1.1 | Tomato | nucleus | 48.48 | 46.78 |
| CDY15755 | Canola | plastid | 61.21 | 46.54 |
| CDY04570 | Canola | plastid | 61.21 | 46.33 |
| Bra035698.1-P | Field mustard | plastid | 63.64 | 45.85 |
| CDX93609 | Canola | nucleus | 62.42 | 45.78 |
| Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 47.88 | 45.4 |
| CDY31207 | Canola | plastid | 59.39 | 45.37 |
| CDX95115 | Canola | plastid | 61.82 | 44.74 |
| Solyc11g045530.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 46.06 | 44.44 |
| AT2G28500.1 | Thale cress | plastid | 62.42 | 44.4 |
| CDX83290 | Canola | plastid | 61.21 | 43.72 |
| Bra000491.1-P | Field mustard | plastid | 61.21 | 43.72 |
| Solyc02g069440.2.1 | Tomato | nucleus | 42.42 | 43.48 |
| Bra011942.1-P | Field mustard | plastid | 61.21 | 43.35 |
| Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 41.82 | 40.35 |
| Solyc12g100150.1.1 | Tomato | mitochondrion | 39.39 | 38.69 |
| Solyc02g086480.1.1 | Tomato | plastid | 34.55 | 38.26 |
| Solyc02g067800.2.1 | Tomato | plastid | 38.79 | 38.1 |
| Solyc03g063140.2.1 | Tomato | nucleus, plastid | 39.39 | 37.36 |
| Solyc06g075330.1.1 | Tomato | golgi, nucleus, plastid | 53.94 | 36.78 |
| Solyc03g112430.1.1 | Tomato | nucleus, plastid | 36.97 | 31.12 |
| Solyc06g050430.2.1 | Tomato | nucleus | 40.61 | 30.88 |
| Solyc06g071660.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 35.76 | 29.06 |
| Solyc11g008830.1.1 | Tomato | plastid | 40.0 | 28.7 |
| Solyc06g082430.1.1 | Tomato | cytosol, nucleus, plastid | 39.39 | 28.02 |
| Solyc06g007390.2.1 | Tomato | nucleus | 38.18 | 26.47 |
| Solyc02g065150.1.1 | Tomato | nucleus | 39.39 | 22.34 |
| Solyc02g090410.2.1 | Tomato | mitochondrion, plastid | 40.0 | 20.95 |
Protein Annotations
| EnsemblPlants:Solyc04g050010.1.1 | EnsemblPlantsGene:Solyc04g050010.1 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
| PANTHER:PTHR31301:SF14 | PFAM:PF03195 | PFscan:PS50891 | UniParc:UPI00027669F8 | UniProt:K4BRX4 | MapMan:15.5.24 |
Description
No Description!
Coordinates
chr4:+:45102787..45104315
Molecular Weight (calculated)
18813.5 Da
IEP (calculated)
5.576
GRAVY (calculated)
-0.366
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE LPEDQREDAV NSMVYEANAR IRDPVYGCAA IICQLQKQIS
101: ELQADLVKAQ VEIMNVQIQN TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNLYAPW KSLWT
101: ELQADLVKAQ VEIMNVQIQN TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNLYAPW KSLWT
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.