CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93609	Canola	nucleus	93.42	94.67
Bra018675.1-P	Field mustard	plastid	80.7	89.32
CDY22713	Canola	plastid	69.74	83.25
CDY06285	Canola	nucleus, plastid	69.3	83.16
AT1G07900.1	Thale cress	plastid	66.23	79.47
CDY31207	Canola	plastid	62.28	65.74
CDY62454	Canola	plastid	62.28	65.44
CDX77182	Canola	plastid	61.84	64.98
CDY15755	Canola	plastid	61.4	64.52
CDY04570	Canola	plastid	60.53	63.3
CDX83290	Canola	plastid	63.16	62.34
Solyc04g050010.1.1	Tomato	cytosol	44.74	61.82
KRH10407	Soybean	mitochondrion	46.49	61.63
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	44.3	58.38
Solyc11g072470.1.1	Tomato	plastid	48.25	58.2
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	50.44	56.93
VIT_13s0019g03700.t01	Wine grape	plastid	49.12	56.85
KRH24932	Soybean	nucleus, plastid	50.0	56.44
KRG89044	Soybean	nucleus, plastid	50.44	56.37
CDY51008	Canola	mitochondrion	34.21	56.12
KRH22937	Soybean	plastid	48.68	56.06
GSMUA_Achr6P33070_001	Banana	plastid	47.81	55.61
VIT_06s0004g03350.t01	Wine grape	plastid	49.56	55.39
CDY72536	Canola	mitochondrion	33.33	55.07
Solyc06g005090.2.1	Tomato	plastid	47.81	55.05
PGSC0003DMT400065346	Potato	plastid	47.81	52.15
KRG91848	Soybean	plastid	50.0	51.35
KRH34918	Soybean	plastid	50.0	51.35
Solyc05g048740.2.1	Tomato	nucleus, plastid	48.25	51.16
CDX83724	Canola	plastid	29.39	50.76
CDY13730	Canola	plastid	29.39	50.76
PGSC0003DMT400019410	Potato	plastid	43.42	50.0
GSMUA_Achr9P04330_001	Banana	plastid	38.6	49.44
CDY20041	Canola	plastid	28.07	48.85
TraesCS1A01G062200.1	Wheat	cytosol, plastid	43.86	48.54
CDY03987	Canola	plastid	28.07	48.48
CDY49773	Canola	plastid	27.63	47.73
PGSC0003DMT400065297	Potato	plastid	45.18	47.69
HORVU1Hr1G012720.1	Barley	cytosol, plastid	43.86	46.51
TraesCS1B01G080600.1	Wheat	cytosol, plastid	43.86	46.51
TraesCS2D01G008400.1	Wheat	plastid	43.86	46.51
Zm00001d035498_P001	Maize	plastid	44.74	46.15
Zm00001d010978_P001	Maize	plastid	42.54	45.75
EES18939	Sorghum	plastid	43.42	45.21
TraesCS4B01G197100.1	Wheat	plastid	43.86	44.84
TraesCS4D01G197400.1	Wheat	plastid	43.86	44.84
Zm00001d028721_P001	Maize	plastid	46.05	44.68
EER92422	Sorghum	plastid	46.05	44.68
HORVU4Hr1G056890.2	Barley	plastid	43.86	44.64
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	32.89	43.6
CDY66794	Canola	mitochondrion	31.14	43.56
CDY40054	Canola	mitochondrion	31.14	43.56
TraesCS4A01G107300.1	Wheat	plastid	42.54	43.5
Zm00001d047752_P001	Maize	plastid	45.18	43.1
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	32.46	43.02
CDX81767	Canola	cytosol, nucleus, plastid	30.7	42.68
Os03t0287400-01	Rice	plastid	43.86	41.84
CDY10714	Canola	mitochondrion	34.21	41.27
CDY50999	Canola	cytosol, mitochondrion, plastid	29.39	40.85
CDY24027	Canola	mitochondrion	33.33	40.43
CDY16738	Canola	plastid	30.26	39.2
CDY48125	Canola	plastid	30.26	39.2
CDY68853	Canola	plastid	30.26	38.12
CDY69697	Canola	plastid	29.82	37.57
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	37.72	35.54
CDY46781	Canola	nucleus, plastid	29.39	33.17
CDY16414	Canola	nucleus, plastid	29.39	33.17
CDY23903	Canola	plastid	28.07	32.32
CDY67958	Canola	plastid	28.07	32.32
CDY06988	Canola	plastid	27.63	31.34
CDX93178	Canola	cytosol, nucleus, plastid	28.51	28.63
CDY24903	Canola	mitochondrion	28.51	28.14
CDY07604	Canola	mitochondrion	28.07	27.59
CDY10726	Canola	mitochondrion	27.63	26.69
CDY02059	Canola	mitochondrion	27.63	26.69
CDX89590	Canola	mitochondrion, nucleus	31.14	23.05
CDX68120	Canola	mitochondrion, nucleus	31.14	23.05
CDY49845	Canola	nucleus, plastid	29.39	21.47
CDY52150	Canola	nucleus, plastid	28.95	20.89
CDY12784	Canola	nucleus, plastid	29.82	20.24
CDY01457	Canola	nucleus, plastid	29.82	20.12
CDY18621	Canola	nucleus, plastid	25.0	18.81
CDX81360	Canola	plastid	25.44	17.31

Protein Annotations

EnsemblPlants:CDX95115	EnsemblPlantsGene:GSBRNA2T00100652001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDX95115	ProteinID:CDX95115.1	SEG:seg
UniParc:UPI0004EF0675	MapMan:15.5.24	:	:	:	:

Description

BnaC05g05560D

Coordinates

chrLK031886:-:1230936..1232257

Molecular Weight (calculated)

25313.6 Da

IEP (calculated)

7.336

GRAVY (calculated)

-0.162

Length

228 amino acids

Sequence
(BLAST)

001: MASFMMSAGS PHFVYNSIYT TYLPKSTSPS KQLIMLDMES KCDASAAIIS ASPTSSPPPP QLSPRLVLSP CAACKILRRR CGDKCVLAPY FPPTEPAKFT
101: IAHRVFGASN IIKLLQELPE SQRTDAVNSM VYEAGARIRD PIYGCAGAIY NLQRQVSELQ AQLAKAQVEI VSMQLQRSNL LELIHNMDQP NQELHNMSFD
201: KSNDFGLPDD IKYTNTIPST LWCDPLWI

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.