Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92422 | Sorghum | plastid | 91.91 | 91.91 |
| Zm00001d047752_P001 | Maize | plastid | 87.66 | 86.19 |
| TraesCS4B01G197100.1 | Wheat | plastid | 71.91 | 75.78 |
| HORVU4Hr1G056890.2 | Barley | plastid | 71.91 | 75.45 |
| TraesCS4D01G197400.1 | Wheat | plastid | 71.49 | 75.34 |
| TraesCS4A01G107300.1 | Wheat | plastid | 70.21 | 73.99 |
| Os03t0287400-01 | Rice | plastid | 71.49 | 70.29 |
| Solyc11g072470.1.1 | Tomato | plastid | 50.21 | 62.43 |
| KRH10407 | Soybean | mitochondrion | 44.68 | 61.05 |
| VIT_06s0004g03330.t01 | Wine grape | nucleus, plastid | 52.34 | 60.89 |
| KRH24932 | Soybean | nucleus, plastid | 51.91 | 60.4 |
| Solyc06g005090.2.1 | Tomato | plastid | 50.64 | 60.1 |
| KRG89044 | Soybean | nucleus, plastid | 51.49 | 59.31 |
| PGSC0003DMT400065346 | Potato | plastid | 51.91 | 58.37 |
| VIT_06s0004g03350.t01 | Wine grape | plastid | 50.64 | 58.33 |
| GSMUA_Achr7P15500_001 | Banana | nucleus | 48.51 | 58.16 |
| GSMUA_Achr8P09700_001 | Banana | cytosol | 49.79 | 57.35 |
| KRH22937 | Soybean | plastid | 48.09 | 57.07 |
| VIT_13s0019g03700.t01 | Wine grape | plastid | 47.66 | 56.85 |
| GSMUA_Achr4P16790_001 | Banana | plastid | 45.96 | 56.84 |
| Zm00001d035498_P001 | Maize | plastid | 52.34 | 55.66 |
| AT1G07900.1 | Thale cress | plastid | 44.68 | 55.26 |
| KRG91848 | Soybean | plastid | 49.79 | 52.7 |
| KRH34918 | Soybean | plastid | 48.94 | 51.8 |
| Zm00001d010978_P001 | Maize | plastid | 46.38 | 51.42 |
| CDY22713 | Canola | plastid | 41.7 | 51.31 |
| CDY06285 | Canola | nucleus, plastid | 40.85 | 50.53 |
| Bra018675.1-P | Field mustard | plastid | 44.26 | 50.49 |
| GSMUA_Achr10P... | Banana | plastid | 52.77 | 49.6 |
| PGSC0003DMT400065297 | Potato | plastid | 44.68 | 48.61 |
| CDY15755 | Canola | plastid | 44.26 | 47.93 |
| CDY62454 | Canola | plastid | 43.83 | 47.47 |
| Bra031599.1-P | Field mustard | nucleus, plastid | 41.7 | 47.34 |
| CDY04570 | Canola | plastid | 43.83 | 47.25 |
| CDY31207 | Canola | plastid | 43.4 | 47.22 |
| GSMUA_Achr3P17800_001 | Banana | mitochondrion, plastid | 46.81 | 47.01 |
| CDX77182 | Canola | plastid | 43.4 | 47.0 |
| CDX95115 | Canola | plastid | 44.68 | 46.05 |
| Bra000491.1-P | Field mustard | plastid | 45.11 | 45.89 |
| CDX83290 | Canola | plastid | 45.11 | 45.89 |
| Bra035698.1-P | Field mustard | plastid | 44.68 | 45.85 |
| AT2G28500.1 | Thale cress | plastid | 45.11 | 45.69 |
| Bra011942.1-P | Field mustard | plastid | 45.11 | 45.49 |
| CDX93609 | Canola | nucleus | 43.4 | 45.33 |
| Zm00001d038013_P001 | Maize | mitochondrion | 30.64 | 36.92 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 30.21 | 35.68 |
| Zm00001d033466_P001 | Maize | plastid | 31.49 | 35.07 |
| Zm00001d009823_P001 | Maize | plastid | 27.66 | 29.68 |
| Zm00001d043036_P001 | Maize | cytosol | 27.66 | 27.43 |
| Zm00001d039694_P001 | Maize | plastid | 29.36 | 26.44 |
| Zm00001d042560_P002 | Maize | plastid | 27.66 | 25.0 |
| Zm00001d038197_P001 | Maize | plastid | 28.51 | 24.1 |
| Zm00001d033335_P001 | Maize | plastid | 27.23 | 22.78 |
| Zm00001d013732_P001 | Maize | plastid | 27.66 | 21.74 |
| Zm00001d010264_P001 | Maize | plastid | 25.11 | 21.38 |
| Zm00001d047521_P001 | Maize | plastid | 20.85 | 20.76 |
Protein Annotations
| EnsemblPlants:Zm00001d028721_P001 | EnsemblPlants:Zm00001d028721_T001 | EnsemblPlantsGene:Zm00001d028721 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil |
| PANTHER:PTHR31301 | PANTHER:PTHR31301:SF29 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:ONL96863.1 | SEG:seg |
| UniParc:UPI00022200AE | UniProt:A0A1D6JZ19 | MapMan:15.5.24 | : | : | : |
Description
LBD-transcription factor 4LOB domain protein 11
Coordinates
chr1:-:44340623..44341737
Molecular Weight (calculated)
25088.7 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.268
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYGNASAG TAAPQPQQYY CRSVSPPSRV SSSCSPPPPP PPPAVLQVVG NVPPPTVVLS PCAACKILRR RCADGCVLAP YFPPTEPAKF TTAHRVFGAS
101: NIIKLLQDLP ESSRADAVSS MVYEAEARLR DPVYGCAGAV CRLQKQANEL KVQLARAQAD LLNAQAKHAN LLALFCVEMA NRRGNQQHPS PLTTMMDGGG
201: GGGFGAAAYY QQTTLYDSDL DSATTWPDHE AQLWT
101: NIIKLLQDLP ESSRADAVSS MVYEAEARLR DPVYGCAGAV CRLQKQANEL KVQLARAQAD LLNAQAKHAN LLALFCVEMA NRRGNQQHPS PLTTMMDGGG
201: GGGFGAAAYY QQTTLYDSDL DSATTWPDHE AQLWT
001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC
Arabidopsis Description
LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.