Factsheet for GSMUA_Achr8P09700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15500_001	Banana	nucleus	75.98	79.08
KRH10407	Soybean	mitochondrion	53.92	63.95
GSMUA_Achr10P...	Banana	plastid	76.47	62.4
GSMUA_Achr6P33070_001	Banana	plastid	59.31	61.73
VIT_06s0004g03350.t01	Wine grape	plastid	59.8	59.8
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	58.82	59.41
KRH22937	Soybean	plastid	57.35	59.09
KRH24932	Soybean	nucleus, plastid	58.33	58.91
Solyc11g072470.1.1	Tomato	plastid	54.41	58.73
KRG89044	Soybean	nucleus, plastid	57.84	57.84
VIT_13s0019g03700.t01	Wine grape	plastid	55.39	57.36
Solyc06g005090.2.1	Tomato	plastid	54.41	56.06
GSMUA_Achr4P16790_001	Banana	plastid	51.96	55.79
GSMUA_Achr9P04330_001	Banana	plastid	48.53	55.62
PGSC0003DMT400065346	Potato	plastid	56.86	55.5
TraesCS1A01G062200.1	Wheat	cytosol, plastid	55.88	55.34
TraesCS1B01G080600.1	Wheat	cytosol, plastid	56.37	53.49
TraesCS2D01G008400.1	Wheat	plastid	56.37	53.49
HORVU1Hr1G012720.1	Barley	cytosol, plastid	56.37	53.49
KRG91848	Soybean	plastid	56.86	52.25
KRH34918	Soybean	plastid	56.37	51.8
EES18939	Sorghum	plastid	55.39	51.6
EER92422	Sorghum	plastid	59.31	51.49
Zm00001d035498_P001	Maize	plastid	54.9	50.68
Zm00001d010978_P001	Maize	plastid	51.96	50.0
Zm00001d028721_P001	Maize	plastid	57.35	49.79
TraesCS4D01G197400.1	Wheat	plastid	53.92	49.33
TraesCS4B01G197100.1	Wheat	plastid	53.92	49.33
HORVU4Hr1G056890.2	Barley	plastid	53.92	49.11
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	34.31	48.95
Zm00001d047752_P001	Maize	plastid	56.86	48.54
GSMUA_Achr10P...	Banana	mitochondrion	37.25	48.1
GSMUA_Achr10P...	Banana	mitochondrion	37.25	48.1
TraesCS4A01G107300.1	Wheat	plastid	52.45	47.98
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	54.9	47.86
Os03t0287400-01	Rice	plastid	54.9	46.86
PGSC0003DMT400065297	Potato	plastid	49.02	46.3
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	36.27	45.68
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	34.31	44.87
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	34.8	43.56
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	34.31	43.21
GSMUA_Achr5P02190_001	Banana	mitochondrion	34.8	42.77
GSMUA_Achr2P13170_001	Banana	nucleus	33.82	39.66
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	33.82	37.91
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	33.82	37.1
GSMUA_AchrUn_...	Banana	plastid	31.86	35.33
GSMUA_Achr5P07460_001	Banana	nucleus	33.82	33.01
GSMUA_Achr11P...	Banana	cytosol	33.33	31.34
GSMUA_Achr7P22200_001	Banana	nucleus	31.86	30.81
GSMUA_Achr6P04670_001	Banana	mitochondrion	36.27	25.69
GSMUA_Achr2P17160_001	Banana	mitochondrion	29.41	19.93

Protein Annotations

EnsemblPlants:GSMUA_Achr8P09700_001	EnsemblPlants:GSMUA_Achr8T09700_001	EnsemblPlantsGene:GSMUA_Achr8G09700_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000295D16C
UniProt:M0TP23	MapMan:15.5.24	:	:	:	:

Description

LOB domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G09700_001]

Coordinates

chr8:-:6825713..6826421

Molecular Weight (calculated)

22308.4 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.195

Length

204 amino acids

Sequence
(BLAST)

001: MDSSDTTTTG FHHVSSSPET SPFSATPSLP ATPTTVVIHS PCAACKILRR RCADNCVLAP YFPPTEPLKF TTAHRVFGAS NIIKLLQDLP ENQRADTVSS
101: MVYEAKARIR DPVYGCTGAV CQLQKQVDEL QAQLARAKAE LTNLQAQHGN LLALICMEMA RTQQDCTPQS VDDALAASPC MFQSDADFLD EISQGLVWDE
201: PHWL

Best Arabidopsis Sequence Match ( AT1G07900.1 )
(BLAST)

001: MESKSDASVA TTPIISSSSS PPPSLSPRVV LSPCAACKIL RRRCAERCVL APYFPPTDPA KFTIAHRVFG ASNIIKFLQE LPESQRTDAV NSMVYEAEAR
101: IRDPVYGCAG AIYHLQRQVS ELQAQLAKAQ VEMVNMQFQR SNLLELIYNM DQQQKQEQDN MSFESNDLGF LEDKSNTNSS MLWWDPLWTC

Arabidopsis Description

LBD1LBD1 [Source:UniProtKB/TrEMBL;Acc:A0A178WM56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.