Factsheet for VIT_06s0004g03330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g03350.t01	Wine grape	plastid	82.67	81.86
VIT_13s0019g03760.t01	Wine grape	plastid	45.05	66.42
VIT_13s0019g03700.t01	Wine grape	plastid	63.37	64.97
GSMUA_Achr7P15500_001	Banana	nucleus	62.38	64.29
AT1G07900.1	Thale cress	plastid	60.4	64.21
KRG91848	Soybean	plastid	67.33	61.26
KRH34918	Soybean	plastid	66.83	60.81
VIT_13s0019g03720.t01	Wine grape	nucleus, plastid	47.52	59.26
GSMUA_Achr8P09700_001	Banana	cytosol	59.41	58.82
CDY22713	Canola	plastid	55.45	58.64
VIT_13s0019g03710.t01	Wine grape	nucleus, plastid	47.52	58.18
VIT_13s0019g03750.t01	Wine grape	plastid	50.0	58.05
CDY06285	Canola	nucleus, plastid	54.46	57.89
Bra018675.1-P	Field mustard	plastid	57.92	56.8
VIT_13s0019g03780.t01	Wine grape	plastid	48.51	56.65
CDY15755	Canola	plastid	60.4	56.22
CDY62454	Canola	plastid	60.4	56.22
GSMUA_Achr4P16790_001	Banana	plastid	52.48	55.79
CDX77182	Canola	plastid	59.9	55.76
CDY31207	Canola	plastid	58.91	55.09
TraesCS1A01G062200.1	Wheat	cytosol, plastid	55.94	54.85
AT2G28500.1	Thale cress	plastid	62.87	54.74
Bra031599.1-P	Field mustard	nucleus, plastid	55.94	54.59
CDY04570	Canola	plastid	58.91	54.59
Bra035698.1-P	Field mustard	plastid	61.39	54.15
CDX83290	Canola	plastid	61.88	54.11
Bra000491.1-P	Field mustard	plastid	61.88	54.11
HORVU1Hr1G012720.1	Barley	cytosol, plastid	56.93	53.49
TraesCS2D01G008400.1	Wheat	plastid	56.44	53.02
TraesCS1B01G080600.1	Wheat	cytosol, plastid	56.44	53.02
TraesCS4B01G197100.1	Wheat	plastid	58.42	52.91
Bra011942.1-P	Field mustard	plastid	60.89	52.79
HORVU4Hr1G056890.2	Barley	plastid	58.42	52.68
TraesCS4D01G197400.1	Wheat	plastid	57.92	52.47
Zm00001d028721_P001	Maize	plastid	60.89	52.34
Zm00001d035498_P001	Maize	plastid	56.93	52.04
TraesCS4A01G107300.1	Wheat	plastid	57.43	52.02
EER92422	Sorghum	plastid	60.4	51.91
GSMUA_Achr10P...	Banana	plastid	63.86	51.6
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	43.07	51.18
CDX93609	Canola	nucleus	56.93	51.11
EES18939	Sorghum	plastid	54.95	50.68
CDX95115	Canola	plastid	56.93	50.44
Zm00001d047752_P001	Maize	plastid	59.41	50.21
Zm00001d010978_P001	Maize	plastid	52.48	50.0
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	40.1	49.69
Os03t0287400-01	Rice	plastid	58.42	49.37
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	41.09	47.43
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	53.47	46.15
VIT_13s0067g01880.t01	Wine grape	mitochondrion	38.12	45.03
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	32.67	38.82
VIT_17s0000g09010.t01	Wine grape	plastid	31.68	34.78
VIT_13s0067g02380.t01	Wine grape	nucleus	35.64	32.14
VIT_00s0340g00090.t01	Wine grape	nucleus	32.67	30.56
VIT_06s0004g07790.t01	Wine grape	cytosol	33.17	29.26
VIT_00s1247g00010.t01	Wine grape	nucleus	32.18	26.97
VIT_07s0197g00030.t01	Wine grape	nucleus	29.7	24.49
VIT_07s0197g00020.t01	Wine grape	nucleus	32.67	22.6
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	31.68	22.3
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	32.18	21.74

Protein Annotations

ArrayExpress:VIT_06s0004g03330	EMBL:FN594951	EnsemblPlants:VIT_06s0004g03330.t01	EnsemblPlantsGene:VIT_06s0004g03330	EntrezGene:100251969	EntrezGene:LOC100251969
InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF6	PFAM:PF03195
PFscan:PS50891	ProteinID:CBI16264	ProteinID:CBI16264.3	RefSeq:XP_002282070	RefSeq:XP_002282070.1	SEG:seg
UniParc:UPI00015C7CEE	UniProt:D7SKT6	wikigene:100251969	wikigene:LOC100251969	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr6:-:4180916..4182149

Molecular Weight (calculated)

22030.0 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.268

Length

202 amino acids

Sequence
(BLAST)

001: MECSDSTAAT NNSSCSSSSP RSLSPSSSSS PPPPNVVLSP CAACKILRRR CADKCVLAPY FPPTDPAKFT TAHRVFGASN IIKFLQELPE FQRADAVSSM
101: VYEAQARIRD PVYGCAGAIC QLQKQLDELQ AQLAKTQAEL VNMQCQQANL VTMICMEMEM SQSPQPSSEE SLDSLISPQS YQSNSFFLDD SNIGATWEPL
201: WT

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.