Factsheet for VIT_06s0004g07200.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51008	Canola	mitochondrion	73.01	85.61
CDY72536	Canola	mitochondrion	72.39	85.51
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	80.98	81.48
KRG98217	Soybean	mitochondrion	82.21	77.91
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	77.3	77.78
Solyc06g082310.2.1	Tomato	mitochondrion, nucleus, plastid	82.82	77.59
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	82.21	77.46
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	73.62	76.92
VIT_13s0067g01880.t01	Wine grape	mitochondrion	78.53	74.85
GSMUA_Achr10P...	Banana	mitochondrion	70.55	72.78
GSMUA_Achr10P...	Banana	mitochondrion	69.94	72.15
CDY10714	Canola	mitochondrion	80.98	69.84
Bra018335.1-P	Field mustard	mitochondrion	80.98	69.84
Solyc06g050950.2.1	Tomato	mitochondrion, nucleus, plastid	73.01	69.59
AT2G30130.1	Thale cress	mitochondrion, nucleus	82.21	69.43
CDY24027	Canola	mitochondrion	79.75	69.15
PGSC0003DMT400061511	Potato	mitochondrion	72.39	69.01
Bra021612.1-P	Field mustard	nucleus	80.37	68.95
Bra022780.1-P	Field mustard	mitochondrion, nucleus	79.14	68.62
TraesCS1D01G224000.1	Wheat	mitochondrion	74.23	64.02
TraesCS1B01G235700.1	Wheat	mitochondrion	74.23	64.02
TraesCS1A01G222300.1	Wheat	mitochondrion	74.23	64.02
Zm00001d038013_P001	Maize	mitochondrion	70.55	58.97
Os05t0346800-00	Rice	cytosol, nucleus	73.01	57.49
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	59.51	57.06
EES19343	Sorghum	mitochondrion	71.17	53.46
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.44	52.57
HORVU1Hr1G060290.2	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	74.23	51.93
VIT_13s0019g03760.t01	Wine grape	plastid	43.56	51.82
VIT_13s0019g03710.t01	Wine grape	nucleus, plastid	43.56	43.03
VIT_13s0019g03720.t01	Wine grape	nucleus, plastid	42.33	42.59
VIT_13s0019g03700.t01	Wine grape	plastid	50.92	42.13
VIT_13s0019g03750.t01	Wine grape	plastid	44.79	41.95
VIT_06s0004g03350.t01	Wine grape	plastid	51.53	41.18
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	42.33	40.59
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	49.69	40.1
VIT_13s0019g03780.t01	Wine grape	plastid	42.33	39.88
VIT_17s0000g09010.t01	Wine grape	plastid	44.79	39.67
VIT_13s0067g02380.t01	Wine grape	nucleus	50.92	37.05
VIT_00s0340g00090.t01	Wine grape	nucleus	47.24	35.65
VIT_06s0004g07790.t01	Wine grape	cytosol	48.47	34.5
VIT_00s1247g00010.t01	Wine grape	nucleus	47.24	31.95
VIT_07s0197g00030.t01	Wine grape	nucleus	46.01	30.61
VIT_07s0197g00020.t01	Wine grape	nucleus	47.85	26.71
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	45.4	25.78
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	44.17	24.08

Protein Annotations

EntrezGene:100251897	wikigene:100251897	MapMan:15.5.24	EMBL:AM489080	ProteinID:CAN68873	ProteinID:CAN68873.1
ProteinID:CBI15894	ProteinID:CBI15894.3	ncoils:Coil	UniProt:D7SJR8	EMBL:FN594951	InterPro:IPR004883
InterPro:LOB	EntrezGene:LOC100251897	wikigene:LOC100251897	PFAM:PF03195	PFscan:PS50891	PANTHER:PTHR31301
PANTHER:PTHR31301:SF57	UniParc:UPI00015C76D2	ArrayExpress:VIT_06s0004g07200	EnsemblPlantsGene:VIT_06s0004g07200	EnsemblPlants:VIT_06s0004g07200.t01	RefSeq:XP_002278121
RefSeq:XP_002278121.2	RefSeq:XP_019075938.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:7971884..7972497

Molecular Weight (calculated)

18236.8 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.207

Length

163 amino acids

Sequence
(BLAST)

001: MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRI DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSQLQMQLA
101: VAQTEILCIQ MQQEEPALPT QMDQDEKSLL LSNNSFNNLQ HYLSFASSSN VIQDPLKRES LWT

Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)

001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT

Arabidopsis Description

LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.