Factsheet for VIT_13s0019g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03760.t01	Wine grape	plastid	62.07	78.83
VIT_13s0019g03710.t01	Wine grape	nucleus, plastid	62.64	66.06
VIT_13s0019g03720.t01	Wine grape	nucleus, plastid	61.49	66.05
VIT_13s0019g03780.t01	Wine grape	plastid	59.77	60.12
VIT_13s0019g03700.t01	Wine grape	plastid	57.47	50.76
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	58.05	50.0
VIT_06s0004g03350.t01	Wine grape	plastid	54.02	46.08
VIT_06s0004g07200.t01	Wine grape	mitochondrion, nucleus	41.95	44.79
Solyc01g044520.1.1	Tomato	nucleus	42.53	43.27
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	41.95	42.94
VIT_13s0067g01880.t01	Wine grape	mitochondrion	41.95	42.69
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	41.95	41.71
PGSC0003DMT400038248	Potato	nucleus	29.89	40.62
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	36.78	37.65
VIT_17s0000g09010.t01	Wine grape	plastid	36.78	34.78
VIT_13s0067g02380.t01	Wine grape	nucleus	39.08	30.36
VIT_00s0340g00090.t01	Wine grape	nucleus	37.36	30.09
VIT_06s0004g07790.t01	Wine grape	cytosol	36.21	27.51
VIT_00s1247g00010.t01	Wine grape	nucleus	36.21	26.14
VIT_07s0197g00030.t01	Wine grape	nucleus	33.91	24.08
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	37.93	22.07
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	36.21	21.95
VIT_07s0197g00020.t01	Wine grape	nucleus	36.21	21.58

Protein Annotations

ArrayExpress:VIT_13s0019g03750	EMBL:AM455510	EMBL:FN595998	EnsemblPlants:VIT_13s0019g03750.t01	EnsemblPlantsGene:VIT_13s0019g03750	EntrezGene:100246173
InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF14	PFAM:PF03195
PFscan:PS50891	ProteinID:CAN70036	ProteinID:CAN70036.1	ProteinID:CCB56214	ProteinID:CCB56214.1	RefSeq:XP_010658439.1
SEG:seg	UniParc:UPI00015C9F43	UniProt:F6HNJ5	MapMan:15.5.24	:	:

Description

No Description!

Coordinates

chr13:+:4938170..4938957

Molecular Weight (calculated)

19116.7 Da

IEP (calculated)

7.422

GRAVY (calculated)

-0.259

Length

174 amino acids

Sequence
(BLAST)

001: MEYTHRTTAT LGVSTTILSA SSSNSSPSPS PSSLPTTVQG PCAACKILRR RCTERCVLAP YFPPTEPLKF VIAHKVFGAS NIVKALQELP ESKRADAVSS
101: MVYEAYARNR DPVYGCAGAI SHLQKQLNDL QAELAMTQAA LLLIQCQQHE QNHENTAIFD QDKYFSSVLE PSWQ

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.