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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • mitochondrion 4
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra022780.1-P Field mustard mitochondrion, nucleus 98.94 98.94
CDY72536 Canola mitochondrion 72.34 98.55
CDY51008 Canola mitochondrion 68.09 92.09
CDY10714 Canola mitochondrion 88.83 88.36
AT2G30130.1 Thale cress mitochondrion, nucleus 90.43 88.08
VIT_06s0004g07200.t01 Wine grape mitochondrion, nucleus 69.15 79.75
PGSC0003DMT400078256 Potato mitochondrion, nucleus, plastid 67.55 73.41
Solyc06g082310.2.1 Tomato mitochondrion, nucleus, plastid 67.55 72.99
KRH30173 Soybean mitochondrion, nucleus 66.49 72.67
KRG98217 Soybean mitochondrion 66.49 72.67
KRH73255 Soybean mitochondrion, nucleus, plastid 58.51 71.43
KRH14912 Soybean nucleus 57.98 71.24
GSMUA_Achr5P29470_001 Banana mitochondrion, nucleus 51.6 67.83
VIT_13s0067g01880.t01 Wine grape mitochondrion 61.17 67.25
KRG97685 Soybean mitochondrion, nucleus 56.38 64.24
PGSC0003DMT400061511 Potato mitochondrion 57.98 63.74
Solyc06g050950.2.1 Tomato mitochondrion, nucleus, plastid 57.45 63.16
TraesCS1D01G224000.1 Wheat mitochondrion 60.64 60.32
TraesCS1A01G222300.1 Wheat mitochondrion 60.64 60.32
TraesCS1B01G235700.1 Wheat mitochondrion 60.64 60.32
Zm00001d038013_P001 Maize mitochondrion 57.98 55.9
Os05t0346800-00 Rice cytosol, nucleus 59.04 53.62
CDY13730 Canola plastid 36.7 52.27
CDX83724 Canola plastid 36.7 52.27
CDX81767 Canola cytosol, nucleus, plastid 45.21 51.83
EES19343 Sorghum mitochondrion 59.04 51.15
CDY03987 Canola plastid 35.64 50.76
CDX77553 Canola cytosol, mitochondrion, nucleus, plastid 46.28 50.58
CDY50999 Canola cytosol, mitochondrion, plastid 43.62 50.0
CDY50718 Canola cytosol, mitochondrion, nucleus, plastid 45.74 50.0
CDY40054 Canola mitochondrion 43.09 49.69
CDY20041 Canola plastid 34.57 49.62
CDY49773 Canola plastid 34.57 49.24
CDY66794 Canola mitochondrion 42.55 49.08
HORVU1Hr1G060290.2 Barley endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 60.64 48.93
CDY16738 Canola plastid 39.36 42.05
CDY48125 Canola plastid 39.36 42.05
CDY69697 Canola plastid 40.43 41.99
CDY68853 Canola plastid 39.89 41.44
CDY23903 Canola plastid 42.02 39.9
CDY67958 Canola plastid 42.02 39.9
CDY22713 Canola plastid 39.89 39.27
CDY06285 Canola nucleus, plastid 39.36 38.95
CDY06988 Canola plastid 41.49 38.81
CDY16414 Canola nucleus, plastid 39.36 36.63
CDY46781 Canola nucleus, plastid 39.36 36.63
CDY04570 Canola plastid 41.49 35.78
CDY62454 Canola plastid 40.96 35.48
CDX77182 Canola plastid 40.96 35.48
CDY15755 Canola plastid 40.96 35.48
CDX93178 Canola cytosol, nucleus, plastid 42.55 35.24
CDY24903 Canola mitochondrion 43.09 35.06
CDY31207 Canola plastid 39.89 34.72
CDY07604 Canola mitochondrion 42.55 34.48
CDX93609 Canola nucleus 40.43 33.78
CDY10726 Canola mitochondrion 42.02 33.47
CDX83290 Canola plastid 40.96 33.33
CDX95115 Canola plastid 40.43 33.33
CDY02059 Canola mitochondrion 41.49 33.05
CDY49845 Canola nucleus, plastid 39.89 24.04
CDY52150 Canola nucleus, plastid 39.89 23.73
CDX68120 Canola mitochondrion, nucleus 38.83 23.7
CDX89590 Canola mitochondrion, nucleus 38.83 23.7
CDY12784 Canola nucleus, plastid 40.96 22.92
CDY01457 Canola nucleus, plastid 40.96 22.78
CDY18621 Canola nucleus, plastid 35.11 21.78
CDX81360 Canola plastid 38.3 21.49
Protein Annotations
EnsemblPlants:CDY24027EnsemblPlantsGene:GSBRNA2T00024550001InterPro:IPR004883InterPro:LOBncoils:CoilPANTHER:PTHR31301
PANTHER:PTHR31301:SF57PFAM:PF03195PFscan:PS50891ProteinID:CDY24027ProteinID:CDY24027.1SEG:seg
UniParc:UPI0004EBED2CUniProt:A0A078GFX3MapMan:15.5.24:::
Description
BnaC03g16640DBnaC03g16640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFX3]
Coordinates
chrLK032152:-:534433..535245
Molecular Weight (calculated)
21044.1 Da
IEP (calculated)
6.925
GRAVY (calculated)
-0.338
Length
188 amino acids
Sequence
(BLAST)
001: MRGPGSSPCA SCKLLRRRCA KECIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVTQLQMQ
101: LAVAQTEILC IQMQHEPALQ SHHEVFELDQ DDKAHLLHSN NNSINNCNNN YNLAYAMSSG QLNSNFASPS SIIQMQMQDP LKQESLWT
Best Arabidopsis Sequence Match ( AT2G30130.1 )
(BLAST)
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.