Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra022780.1-P | Field mustard | mitochondrion, nucleus | 98.94 | 98.94 |
CDY72536 | Canola | mitochondrion | 72.34 | 98.55 |
CDY51008 | Canola | mitochondrion | 68.09 | 92.09 |
CDY10714 | Canola | mitochondrion | 88.83 | 88.36 |
AT2G30130.1 | Thale cress | mitochondrion, nucleus | 90.43 | 88.08 |
VIT_06s0004g07200.t01 | Wine grape | mitochondrion, nucleus | 69.15 | 79.75 |
PGSC0003DMT400078256 | Potato | mitochondrion, nucleus, plastid | 67.55 | 73.41 |
Solyc06g082310.2.1 | Tomato | mitochondrion, nucleus, plastid | 67.55 | 72.99 |
KRH30173 | Soybean | mitochondrion, nucleus | 66.49 | 72.67 |
KRG98217 | Soybean | mitochondrion | 66.49 | 72.67 |
KRH73255 | Soybean | mitochondrion, nucleus, plastid | 58.51 | 71.43 |
KRH14912 | Soybean | nucleus | 57.98 | 71.24 |
GSMUA_Achr5P29470_001 | Banana | mitochondrion, nucleus | 51.6 | 67.83 |
VIT_13s0067g01880.t01 | Wine grape | mitochondrion | 61.17 | 67.25 |
KRG97685 | Soybean | mitochondrion, nucleus | 56.38 | 64.24 |
PGSC0003DMT400061511 | Potato | mitochondrion | 57.98 | 63.74 |
Solyc06g050950.2.1 | Tomato | mitochondrion, nucleus, plastid | 57.45 | 63.16 |
TraesCS1D01G224000.1 | Wheat | mitochondrion | 60.64 | 60.32 |
TraesCS1A01G222300.1 | Wheat | mitochondrion | 60.64 | 60.32 |
TraesCS1B01G235700.1 | Wheat | mitochondrion | 60.64 | 60.32 |
Zm00001d038013_P001 | Maize | mitochondrion | 57.98 | 55.9 |
Os05t0346800-00 | Rice | cytosol, nucleus | 59.04 | 53.62 |
CDY13730 | Canola | plastid | 36.7 | 52.27 |
CDX83724 | Canola | plastid | 36.7 | 52.27 |
CDX81767 | Canola | cytosol, nucleus, plastid | 45.21 | 51.83 |
EES19343 | Sorghum | mitochondrion | 59.04 | 51.15 |
CDY03987 | Canola | plastid | 35.64 | 50.76 |
CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 46.28 | 50.58 |
CDY50999 | Canola | cytosol, mitochondrion, plastid | 43.62 | 50.0 |
CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 45.74 | 50.0 |
CDY40054 | Canola | mitochondrion | 43.09 | 49.69 |
CDY20041 | Canola | plastid | 34.57 | 49.62 |
CDY49773 | Canola | plastid | 34.57 | 49.24 |
CDY66794 | Canola | mitochondrion | 42.55 | 49.08 |
HORVU1Hr1G060290.2 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 60.64 | 48.93 |
CDY16738 | Canola | plastid | 39.36 | 42.05 |
CDY48125 | Canola | plastid | 39.36 | 42.05 |
CDY69697 | Canola | plastid | 40.43 | 41.99 |
CDY68853 | Canola | plastid | 39.89 | 41.44 |
CDY23903 | Canola | plastid | 42.02 | 39.9 |
CDY67958 | Canola | plastid | 42.02 | 39.9 |
CDY22713 | Canola | plastid | 39.89 | 39.27 |
CDY06285 | Canola | nucleus, plastid | 39.36 | 38.95 |
CDY06988 | Canola | plastid | 41.49 | 38.81 |
CDY16414 | Canola | nucleus, plastid | 39.36 | 36.63 |
CDY46781 | Canola | nucleus, plastid | 39.36 | 36.63 |
CDY04570 | Canola | plastid | 41.49 | 35.78 |
CDY62454 | Canola | plastid | 40.96 | 35.48 |
CDX77182 | Canola | plastid | 40.96 | 35.48 |
CDY15755 | Canola | plastid | 40.96 | 35.48 |
CDX93178 | Canola | cytosol, nucleus, plastid | 42.55 | 35.24 |
CDY24903 | Canola | mitochondrion | 43.09 | 35.06 |
CDY31207 | Canola | plastid | 39.89 | 34.72 |
CDY07604 | Canola | mitochondrion | 42.55 | 34.48 |
CDX93609 | Canola | nucleus | 40.43 | 33.78 |
CDY10726 | Canola | mitochondrion | 42.02 | 33.47 |
CDX83290 | Canola | plastid | 40.96 | 33.33 |
CDX95115 | Canola | plastid | 40.43 | 33.33 |
CDY02059 | Canola | mitochondrion | 41.49 | 33.05 |
CDY49845 | Canola | nucleus, plastid | 39.89 | 24.04 |
CDY52150 | Canola | nucleus, plastid | 39.89 | 23.73 |
CDX68120 | Canola | mitochondrion, nucleus | 38.83 | 23.7 |
CDX89590 | Canola | mitochondrion, nucleus | 38.83 | 23.7 |
CDY12784 | Canola | nucleus, plastid | 40.96 | 22.92 |
CDY01457 | Canola | nucleus, plastid | 40.96 | 22.78 |
CDY18621 | Canola | nucleus, plastid | 35.11 | 21.78 |
CDX81360 | Canola | plastid | 38.3 | 21.49 |
Protein Annotations
EnsemblPlants:CDY24027 | EnsemblPlantsGene:GSBRNA2T00024550001 | InterPro:IPR004883 | InterPro:LOB | ncoils:Coil | PANTHER:PTHR31301 |
PANTHER:PTHR31301:SF57 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:CDY24027 | ProteinID:CDY24027.1 | SEG:seg |
UniParc:UPI0004EBED2C | UniProt:A0A078GFX3 | MapMan:15.5.24 | : | : | : |
Description
BnaC03g16640DBnaC03g16640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFX3]
Coordinates
chrLK032152:-:534433..535245
Molecular Weight (calculated)
21044.1 Da
IEP (calculated)
6.925
GRAVY (calculated)
-0.338
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGPGSSPCA SCKLLRRRCA KECIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVTQLQMQ
101: LAVAQTEILC IQMQHEPALQ SHHEVFELDQ DDKAHLLHSN NNSINNCNNN YNLAYAMSSG QLNSNFASPS SIIQMQMQDP LKQESLWT
101: LAVAQTEILC IQMQHEPALQ SHHEVFELDQ DDKAHLLHSN NNSINNCNNN YNLAYAMSSG QLNSNFASPS SIIQMQMQDP LKQESLWT
001: MGGPGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPHKFAIV HKVFGASNVS KMLQELPVHQ RADAVNSLVF EANARVRDPV YGCVGAISYL QNQVSQLQMQ
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
101: LAVAQAEILC IQMQNEPTLQ SHHQVLELDQ DHKALLLNNN NINNCNTNNN NNNFGYAMSS GQFNSNFASP SSIMQMQMQM QMQDPLKQES LWT
Arabidopsis Description
LBD12PCK1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRK1]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.