CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04570	Canola	plastid	95.85	95.41
CDY62454	Canola	plastid	89.4	89.4
CDX77182	Canola	plastid	89.4	89.4
AT2G28500.1	Thale cress	plastid	88.48	82.76
CDY31207	Canola	plastid	81.57	81.94
CDX83290	Canola	plastid	81.11	76.19
CDY22713	Canola	plastid	63.13	71.73
CDY06285	Canola	nucleus, plastid	61.75	70.53
KRH10407	Soybean	mitochondrion	51.61	65.12
CDX93609	Canola	nucleus	65.9	63.56
Solyc11g072470.1.1	Tomato	plastid	53.92	61.9
CDX95115	Canola	plastid	64.52	61.4
Solyc04g050010.1.1	Tomato	cytosol	46.54	61.21
KRH22937	Soybean	plastid	55.76	61.11
Solyc06g005090.2.1	Tomato	plastid	55.3	60.61
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	56.22	60.4
KRG89044	Soybean	nucleus, plastid	56.68	60.29
KRH24932	Soybean	nucleus, plastid	55.76	59.9
VIT_13s0019g03700.t01	Wine grape	plastid	53.92	59.39
VIT_06s0004g03350.t01	Wine grape	plastid	55.3	58.82
PGSC0003DMT400019410	Potato	plastid	52.53	57.58
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	45.16	56.65
PGSC0003DMT400065346	Potato	plastid	54.38	56.46
Solyc05g048740.2.1	Tomato	nucleus, plastid	55.3	55.81
CDY72536	Canola	mitochondrion	35.48	55.8
KRH34918	Soybean	plastid	56.68	55.41
CDY51008	Canola	mitochondrion	35.48	55.4
KRG91848	Soybean	plastid	56.22	54.95
GSMUA_Achr6P33070_001	Banana	plastid	48.85	54.08
PGSC0003DMT400065297	Potato	plastid	50.69	50.93
CDY13730	Canola	plastid	29.95	49.24
CDX83724	Canola	plastid	29.95	49.24
CDY20041	Canola	plastid	29.49	48.85
CDY03987	Canola	plastid	29.49	48.48
TraesCS1A01G062200.1	Wheat	cytosol, plastid	45.62	48.06
GSMUA_Achr9P04330_001	Banana	plastid	39.17	47.75
CDY49773	Canola	plastid	29.03	47.73
Zm00001d035498_P001	Maize	plastid	47.47	46.61
HORVU1Hr1G012720.1	Barley	cytosol, plastid	45.62	46.05
TraesCS1B01G080600.1	Wheat	cytosol, plastid	45.62	46.05
TraesCS2D01G008400.1	Wheat	plastid	45.62	46.05
Zm00001d047752_P001	Maize	plastid	50.69	46.03
HORVU4Hr1G056890.2	Barley	plastid	47.47	45.98
EER92422	Sorghum	plastid	49.77	45.96
TraesCS4D01G197400.1	Wheat	plastid	47.0	45.74
TraesCS4A01G107300.1	Wheat	plastid	46.54	45.29
TraesCS4B01G197100.1	Wheat	plastid	46.54	45.29
Zm00001d010978_P001	Maize	plastid	44.24	45.28
EES18939	Sorghum	plastid	45.62	45.21
Zm00001d028721_P001	Maize	plastid	47.93	44.26
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	35.02	44.19
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	34.56	43.6
CDX81767	Canola	cytosol, nucleus, plastid	32.72	43.29
CDY66794	Canola	mitochondrion	32.26	42.94
CDY40054	Canola	mitochondrion	32.26	42.94
Os03t0287400-01	Rice	plastid	47.0	42.68
CDY24027	Canola	mitochondrion	35.48	40.96
CDY50999	Canola	cytosol, mitochondrion, plastid	30.88	40.85
CDY10714	Canola	mitochondrion	35.48	40.74
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	45.16	40.5
CDY16738	Canola	plastid	30.88	38.07
CDY48125	Canola	plastid	30.88	38.07
CDY68853	Canola	plastid	30.88	37.02
CDY69697	Canola	plastid	30.41	36.46
CDY23903	Canola	plastid	31.34	34.34
CDY67958	Canola	plastid	31.34	34.34
CDY06988	Canola	plastid	30.88	33.33
CDY16414	Canola	nucleus, plastid	30.88	33.17
CDY46781	Canola	nucleus, plastid	30.88	33.17
CDX93178	Canola	cytosol, nucleus, plastid	31.8	30.4
CDY24903	Canola	mitochondrion	31.8	29.87
CDY07604	Canola	mitochondrion	31.34	29.31
CDY02059	Canola	mitochondrion	29.95	27.54
CDY10726	Canola	mitochondrion	29.95	27.54
CDX89590	Canola	mitochondrion, nucleus	31.8	22.4
CDX68120	Canola	mitochondrion, nucleus	31.8	22.4
CDY49845	Canola	nucleus, plastid	29.49	20.51
CDY52150	Canola	nucleus, plastid	29.49	20.25
CDY12784	Canola	nucleus, plastid	29.95	19.35
CDY01457	Canola	nucleus, plastid	29.95	19.23
CDY18621	Canola	nucleus, plastid	25.81	18.48
CDX81360	Canola	plastid	26.73	17.31

Protein Annotations

EnsemblPlants:CDY15755	EnsemblPlantsGene:GSBRNA2T00089998001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY15755	ProteinID:CDY15755.1	SEG:seg
UniParc:UPI0004EE8266	UniProt:A0A078FMS9	MapMan:15.5.24	:	:	:

Description

BnaC04g15690DBnaC04g15690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMS9]

Coordinates

chrLK032057:-:226899..228431

Molecular Weight (calculated)

23844.5 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.228

Length

217 amino acids

Sequence
(BLAST)

001: MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPQQP PQPPVVLSPC AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI
101: IKFLQELPES QRTDAVNSMV YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK LSAQGQQNMS FEMTNDLGFL
201: EDTNNNNSSM SWWVPLW

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.