CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68853	Canola	plastid	98.34	98.34
CDY16738	Canola	plastid	91.16	93.75
CDY48125	Canola	plastid	90.61	93.18
Bra035860.1-P	Field mustard	plastid	88.95	91.48
AT5G63090.3	Thale cress	plastid	92.82	90.32
CDY20041	Canola	plastid	50.28	69.47
CDY49773	Canola	plastid	50.28	68.94
CDX83724	Canola	plastid	50.28	68.94
CDY03987	Canola	plastid	50.28	68.94
CDY13730	Canola	plastid	49.72	68.18
VIT_17s0000g09010.t01	Wine grape	plastid	65.19	64.13
PGSC0003DMT400069646	Potato	plastid	59.12	61.14
KRH54338	Soybean	plastid	62.43	61.08
KRH03242	Soybean	nucleus, plastid	63.54	60.85
KRH63606	Soybean	plastid	60.77	60.44
PGSC0003DMT400046644	Potato	nucleus, plastid	63.54	60.21
KRH57118	Soybean	plastid	63.54	58.38
Solyc03g112430.1.1	Tomato	nucleus, plastid	62.43	57.65
CDY51008	Canola	mitochondrion	42.54	55.4
CDY72536	Canola	mitochondrion	41.99	55.07
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	58.56	52.22
CDY40054	Canola	mitochondrion	41.99	46.63
CDY66794	Canola	mitochondrion	41.99	46.63
CDY46781	Canola	nucleus, plastid	51.38	46.04
CDY16414	Canola	nucleus, plastid	51.38	46.04
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	43.65	45.93
CDX81767	Canola	cytosol, nucleus, plastid	41.44	45.73
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	43.09	45.35
CDY50999	Canola	cytosol, mitochondrion, plastid	40.88	45.12
Os01t0169400-01	Rice	plastid	58.56	42.23
TraesCS3B01G108500.1	Wheat	plastid	58.01	40.86
TraesCS3D01G093500.1	Wheat	plastid	58.01	40.86
CDY10714	Canola	mitochondrion	42.54	40.74
TraesCS3A01G093200.1	Wheat	plastid	57.46	40.47
CDY24027	Canola	mitochondrion	41.99	40.43
Zm00001d039694_P001	Maize	plastid	58.01	40.23
EES00235	Sorghum	plastid	58.01	39.18
HORVU3Hr1G016690.1	Barley	plastid	58.01	37.91
CDY06285	Canola	nucleus, plastid	38.67	36.84
CDY22713	Canola	plastid	38.12	36.13
CDY23903	Canola	plastid	38.67	35.35
CDY67958	Canola	plastid	38.67	35.35
CDY06988	Canola	plastid	37.57	33.83
CDX93178	Canola	cytosol, nucleus, plastid	39.78	31.72
CDY07604	Canola	mitochondrion	39.23	30.6
CDY31207	Canola	plastid	36.46	30.56
CDX77182	Canola	plastid	36.46	30.41
CDY62454	Canola	plastid	36.46	30.41
CDY15755	Canola	plastid	36.46	30.41
CDY24903	Canola	mitochondrion	38.67	30.3
CDY04570	Canola	plastid	36.46	30.28
CDX93609	Canola	nucleus	37.57	30.22
CDX95115	Canola	plastid	37.57	29.82
CDX83290	Canola	plastid	35.91	28.14
CDY49845	Canola	nucleus, plastid	48.07	27.88
CDY52150	Canola	nucleus, plastid	47.51	27.22
CDY10726	Canola	mitochondrion	34.81	26.69
CDY02059	Canola	mitochondrion	34.81	26.69
CDX89590	Canola	mitochondrion, nucleus	45.3	26.62
CDX68120	Canola	mitochondrion, nucleus	45.3	26.62
CDY12784	Canola	nucleus, plastid	46.96	25.3
CDY01457	Canola	nucleus, plastid	46.96	25.15
CDY18621	Canola	nucleus, plastid	41.44	24.75
CDX81360	Canola	plastid	44.2	23.88

Protein Annotations

EnsemblPlants:CDY69697	EnsemblPlantsGene:GSBRNA2T00091509001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF35	PFAM:PF03195	PFscan:PS50891	ProteinID:CDY69697	ProteinID:CDY69697.1	SEG:seg
UniParc:UPI000253F242	UniProt:A0A078JVX7	MapMan:15.5.24	:	:	:

Description

BnaAnng31240DBnaAnng31240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVX7]

Coordinates

chrLK040073:-:2250..2795

Molecular Weight (calculated)

19911.6 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.442

Length

181 amino acids

Sequence
(BLAST)

001: MASSSSNTYN SPCAACKFLR RKCMPGCIFA PYFPPEEPHK FANVHKIFGA SNVTKLLNEL LPHQREDAVN SLAYEAEARV RDPVYGCVGA ISYLQRQVHR
101: LQKELDAANA DLVHYGMSTS TPGNVVDLVF QPQPFPPQPL NPVYRLSGSS PVMTQQPRGT GGSYGTFLPW NNGHDQQGGN M

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.