Factsheet for TraesCS3A01G093200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G108500.1	Wheat	plastid	99.22	99.22
TraesCS3D01G093500.1	Wheat	plastid	98.83	98.83
HORVU3Hr1G016690.1	Barley	plastid	95.33	88.45
Os01t0169400-01	Rice	plastid	77.82	79.68
Zm00001d039694_P001	Maize	plastid	76.26	75.1
EES00235	Sorghum	plastid	76.26	73.13
Bra039072.1-P	Field mustard	plastid	34.24	67.18
CDY20041	Canola	plastid	33.85	66.41
Bra025294.1-P	Field mustard	plastid	33.46	65.15
CDY13730	Canola	plastid	33.46	65.15
CDY49773	Canola	plastid	33.07	64.39
CDX83724	Canola	plastid	33.07	64.39
Solyc02g067800.2.1	Tomato	plastid	42.02	64.29
PGSC0003DMT400017805	Potato	plastid	42.02	64.29
KRH56556	Soybean	nucleus, plastid	42.41	64.12
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	26.85	63.89
PGSC0003DMT400032875	Potato	plastid	38.91	63.69
KRG93235	Soybean	plastid	41.63	63.69
CDY03987	Canola	plastid	32.68	63.64
Bra033019.1-P	Field mustard	plastid	32.68	63.64
Solyc02g086480.1.1	Tomato	plastid	36.58	63.09
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	40.47	61.18
VIT_17s0000g09010.t01	Wine grape	plastid	42.8	59.78
KRH07170	Soybean	plastid	41.63	59.44
KRH54338	Soybean	plastid	42.41	58.92
KRH63606	Soybean	plastid	41.63	58.79
PGSC0003DMT400046644	Potato	nucleus, plastid	43.58	58.64
CDY16738	Canola	plastid	40.08	58.52
CDY48125	Canola	plastid	40.08	58.52
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.86	57.69
CDY69697	Canola	plastid	40.47	57.46
CDY68853	Canola	plastid	40.47	57.46
Bra038606.1-P	Field mustard	plastid	40.47	57.46
Solyc03g112430.1.1	Tomato	nucleus, plastid	43.58	57.14
Bra035860.1-P	Field mustard	plastid	38.91	56.82
KRH03242	Soybean	nucleus, plastid	41.63	56.61
PGSC0003DMT400069646	Potato	plastid	38.52	56.57
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	33.85	54.72
KRH57118	Soybean	plastid	41.63	54.31
AT5G63090.3	Thale cress	plastid	39.3	54.3
Solyc06g071660.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	38.52	48.77
TraesCS4A01G297500.1	Wheat	plastid	29.18	43.35
TraesCS5A01G152200.1	Wheat	plastid	28.79	41.81
TraesCS1A01G222300.1	Wheat	mitochondrion	29.96	40.74
TraesCS3A01G402300.1	Wheat	plastid	35.41	35.14
TraesCS1A01G260000.1	Wheat	plastid	35.41	34.47
TraesCS1A01G062200.1	Wheat	cytosol, plastid	27.63	34.47
TraesCS4A01G235100.1	Wheat	nucleus	33.07	29.51
TraesCS3A01G346300.1	Wheat	cytosol	28.4	29.2
TraesCS1A01G111700.1	Wheat	nucleus	26.85	29.11
TraesCS4A01G107300.1	Wheat	plastid	24.9	28.7

Protein Annotations

EnsemblPlants:TraesCS3A01G093200.1	EnsemblPlantsGene:TraesCS3A01G093200	InterPro:IPR004883	InterPro:LOB	ncoils:Coil	PANTHER:PTHR31301
PANTHER:PTHR31301:SF35	PFAM:PF03195	PFscan:PS50891	SEG:seg	MapMan:15.5.24	:

Description

No Description!

Coordinates

chr3A:+:59532166..59532939

Molecular Weight (calculated)

26493.7 Da

IEP (calculated)

7.718

GRAVY (calculated)

0.022

Length

257 amino acids

Sequence
(BLAST)

001: MASPSSTGNS AVSVVVAAPT TPGAGAPCAA CKFLRRKCLP GCVFAPYFPP EEPQKFANVH KVFGASNVTK LLNELPPHQR EDAVSSLAYE AEARVKDPVY
101: GCVGAISVLQ RQVHRLQKEL DAAHTELLRY ACGELGGIPT ALPVVTASIP TGRLSSAAMP CPGQLGGGMY SGGSGGGFRR LGLVDAIVPQ PPLSAGCYYN
201: MRSSNNAGGS VAAEVAPVQI PYASMANWAV NAISTITTTS GSESIVMDHK EGGDSSM

Best Arabidopsis Sequence Match ( AT5G63090.1 )
(BLAST)

001: MASSSNSYNS PCAACKFLRR KCMPGCIFAP YFPPEEPHKF ANVHKIFGAS NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI SYLQRQVHRL
101: QKELDAANAD LAHYGLSTSA AGAPGNVVDL VFQPQPLPSQ QLPPLNPVYR LSGASPVMNQ MPRGTGGSYG TFLPWNNGHD QQGGNM

Arabidopsis Description

LOBLOB [Source:UniProtKB/TrEMBL;Acc:A0A178UKE6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.