Factsheet for Bra025294.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13730	Canola	plastid	100.0	100.0
CDX83724	Canola	plastid	96.97	96.97
Bra039072.1-P	Field mustard	plastid	91.67	92.37
Bra033019.1-P	Field mustard	plastid	87.88	87.88
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	90.15	74.84
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	56.06	68.52
Solyc02g086480.1.1	Tomato	plastid	67.42	59.73
KRG93235	Soybean	plastid	74.24	58.33
PGSC0003DMT400032875	Potato	plastid	68.94	57.96
KRH56556	Soybean	nucleus, plastid	74.24	57.65
Solyc02g067800.2.1	Tomato	plastid	69.7	54.76
PGSC0003DMT400017805	Potato	plastid	68.94	54.17
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	69.7	54.12
KRH07170	Soybean	plastid	72.73	53.33
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.73	52.75
Bra038606.1-P	Field mustard	plastid	68.18	49.72
Bra035860.1-P	Field mustard	plastid	65.15	48.86
Bra026042.1-P	Field mustard	mitochondrion	52.27	42.33
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.55	41.86
Bra026716.1-P	Field mustard	mitochondrion	50.76	40.85
Bra039733.1-P	Field mustard	nucleus, plastid	61.36	40.1
Bra018335.1-P	Field mustard	mitochondrion	53.79	37.57
Bra021612.1-P	Field mustard	nucleus	53.03	36.84
Bra022780.1-P	Field mustard	mitochondrion, nucleus	52.27	36.7
Os01t0169400-01	Rice	plastid	66.67	35.06
Bra000188.1-P	Field mustard	plastid	52.27	34.67
TraesCS3D01G093500.1	Wheat	plastid	65.15	33.46
TraesCS3B01G108500.1	Wheat	plastid	65.15	33.46
TraesCS3A01G093200.1	Wheat	plastid	65.15	33.46
Zm00001d039694_P001	Maize	plastid	65.15	32.95
Bra031599.1-P	Field mustard	nucleus, plastid	51.52	32.85
Bra016992.1-P	Field mustard	plastid	50.0	32.84
Bra018675.1-P	Field mustard	plastid	50.76	32.52
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	54.55	32.29
EES00235	Sorghum	plastid	65.15	32.09
HORVU3Hr1G016690.1	Barley	plastid	65.15	31.05
Bra018320.1-P	Field mustard	mitochondrion	50.76	28.39
Bra035698.1-P	Field mustard	plastid	49.24	28.38
Bra011942.1-P	Field mustard	plastid	50.0	28.33
Bra000491.1-P	Field mustard	plastid	48.48	27.71
Bra012112.1-P	Field mustard	nucleus, plastid	58.33	22.78
Bra032153.1-P	Field mustard	mitochondrion, nucleus	51.52	22.08
Bra037142.1-P	Field mustard	nucleus, plastid	48.48	16.24

Protein Annotations

EnsemblPlants:Bra025294.1	EnsemblPlants:Bra025294.1-P	EnsemblPlantsGene:Bra025294	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000253FC3E
UniProt:M4E938	MapMan:15.5.24	:	:	:	:

Description

AT3G27650 (E=5e-065) LBD25 | LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)

Coordinates

chrA06:-:22339538..22339936

Molecular Weight (calculated)

14564.2 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.314

Length

132 amino acids

Sequence
(BLAST)

001: MSSSYSSYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPTK FANVHRIFGA SNVSKILQEV APHQREDAVN SLAYEAEARL RDPVYGCVGA ISVLQRQVLG
101: LQRELEETNA DIMRYASCLG GETSSVYGAR RG

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.