Factsheet for Bra018320.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10726	Canola	mitochondrion	100.0	100.0
CDY02059	Canola	mitochondrion	98.73	98.73
AT2G30340.2	Thale cress	nucleus	93.22	81.78
Bra000188.1-P	Field mustard	plastid	52.12	61.81
Bra016992.1-P	Field mustard	plastid	51.27	60.2
HORVU1Hr1G024490.1	Barley	cytosol, mitochondrion, nucleus	40.68	57.83
GSMUA_Achr11P...	Banana	cytosol	50.85	55.3
GSMUA_AchrUn_...	Banana	plastid	42.8	54.89
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	51.27	54.26
GSMUA_Achr7P22200_001	Banana	nucleus	47.46	53.08
GSMUA_Achr5P07460_001	Banana	nucleus	46.61	52.63
Zm00001d009823_P001	Maize	plastid	48.31	52.05
Bra025294.1-P	Field mustard	plastid	28.39	50.76
Bra039072.1-P	Field mustard	plastid	27.54	49.62
TraesCS1B01G131900.2	Wheat	nucleus	48.73	48.52
TraesCS1D01G113100.1	Wheat	nucleus	48.31	48.51
Bra033019.1-P	Field mustard	plastid	27.12	48.48
TraesCS1A01G111700.1	Wheat	nucleus	47.88	47.68
Os05t0165450-00	Rice	extracellular	48.31	45.97
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.2	44.19
Zm00001d043036_P001	Maize	cytosol	44.07	43.88
TraesCS3D01G340000.1	Wheat	cytosol	45.34	43.15
Os01t0825000-01	Rice	cytosol	45.34	42.63
TraesCS3A01G346300.1	Wheat	cytosol	44.92	42.4
Bra022780.1-P	Field mustard	mitochondrion, nucleus	33.47	42.02
OQU87769	Sorghum	cytosol	43.64	41.37
Bra026042.1-P	Field mustard	mitochondrion	27.97	40.49
Bra018335.1-P	Field mustard	mitochondrion	32.2	40.21
Bra021612.1-P	Field mustard	nucleus	32.2	40.0
Bra026716.1-P	Field mustard	mitochondrion	27.54	39.63
OQU77508	Sorghum	cytosol, nucleus, plastid	50.0	38.44
TraesCS3B01G378100.1	Wheat	plastid	43.64	35.27
Bra038606.1-P	Field mustard	plastid	26.69	34.81
Bra035860.1-P	Field mustard	plastid	25.85	34.66
Bra039733.1-P	Field mustard	nucleus, plastid	28.81	33.66
HORVU3Hr1G088440.1	Barley	plastid	45.76	32.73
Bra018675.1-P	Field mustard	plastid	27.12	31.07
Bra031599.1-P	Field mustard	nucleus, plastid	26.27	29.95
Bra011942.1-P	Field mustard	plastid	29.24	29.61
Bra035698.1-P	Field mustard	plastid	28.39	29.26
Bra000491.1-P	Field mustard	plastid	27.54	28.14
Bra032153.1-P	Field mustard	mitochondrion, nucleus	27.12	20.78
Bra012112.1-P	Field mustard	nucleus, plastid	27.97	19.53
Bra037142.1-P	Field mustard	nucleus, plastid	25.0	14.97

Protein Annotations

EnsemblPlants:Bra018320.1	EnsemblPlants:Bra018320.1-P	EnsemblPlantsGene:Bra018320	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF28	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002547B9F
UniProt:M4DP79	MapMan:15.5.24	:	:	:	:

Description

AT2G30340 (E=2e-084) LBD13 | LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)

Coordinates

chrA05:+:7426670..7428607

Molecular Weight (calculated)

25341.8 Da

IEP (calculated)

8.730

GRAVY (calculated)

-0.401

Length

236 amino acids

Sequence
(BLAST)

001: MGIRRHVAVP PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPHKFA AVHKVFGASN VSKMLLEVGE SQRGDAANSL VYEANLRLRD PIYGCMGAIS
101: ALQHHIQSLQ SELTTVRTEI LRHKYREAAT ITSLQNNNNN NFNNTTTSVS DHAALAASIL LPPPPPPPPP PRPPRLLSSQ PAPPPTPPAS LPSPSMVVSS
201: SSSNSSATNS IYNPPPSSTA GYSNSLSSDN NVHYFD

Best Arabidopsis Sequence Match ( AT2G30340.1 )
(BLAST)

001: MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV
101: GESQRGDAAN SLVYEANLRL RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS CDQHALASAI LLPPPPPPPP
201: TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT NSMYNPPPSS TAGYSNSLSS DNNVHYFD

Arabidopsis Description

LBD13LBD13 [Source:UniProtKB/TrEMBL;Acc:A0A178VRU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.