Factsheet for Bra033019.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03987	Canola	plastid	99.24	99.24
Bra039072.1-P	Field mustard	plastid	88.64	89.31
Bra025294.1-P	Field mustard	plastid	87.88	87.88
AT3G27650.1	Thale cress	cytosol, nucleus, plastid	88.64	73.58
KRH76093	Soybean	cytosol, endoplasmic reticulum, nucleus	55.3	67.59
KRG93235	Soybean	plastid	74.24	58.33
Solyc02g086480.1.1	Tomato	plastid	65.15	57.72
KRH56556	Soybean	nucleus, plastid	74.24	57.65
PGSC0003DMT400032875	Potato	plastid	68.18	57.32
Solyc02g067800.2.1	Tomato	plastid	68.94	54.17
VIT_14s0066g00680.t01	Wine grape	nucleus, plastid	69.7	54.12
KRH07170	Soybean	plastid	72.73	53.33
PGSC0003DMT400017805	Potato	plastid	67.42	52.98
KRG94119	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.73	52.75
Bra038606.1-P	Field mustard	plastid	68.94	50.28
Bra035860.1-P	Field mustard	plastid	65.91	49.43
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.55	41.86
Bra026042.1-P	Field mustard	mitochondrion	51.52	41.72
Bra039733.1-P	Field mustard	nucleus, plastid	62.12	40.59
Bra026716.1-P	Field mustard	mitochondrion	50.0	40.24
Bra018335.1-P	Field mustard	mitochondrion	52.27	36.51
Bra021612.1-P	Field mustard	nucleus	51.52	35.79
Bra022780.1-P	Field mustard	mitochondrion, nucleus	50.76	35.64
Os01t0169400-01	Rice	plastid	65.15	34.26
Bra000188.1-P	Field mustard	plastid	50.0	33.17
TraesCS3D01G093500.1	Wheat	plastid	63.64	32.68
TraesCS3B01G108500.1	Wheat	plastid	63.64	32.68
TraesCS3A01G093200.1	Wheat	plastid	63.64	32.68
Zm00001d039694_P001	Maize	plastid	63.64	32.18
Bra031599.1-P	Field mustard	nucleus, plastid	49.24	31.4
Bra016992.1-P	Field mustard	plastid	47.73	31.34
EES00235	Sorghum	plastid	63.64	31.34
Bra018675.1-P	Field mustard	plastid	48.48	31.07
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	51.52	30.49
HORVU3Hr1G016690.1	Barley	plastid	63.64	30.32
Bra000491.1-P	Field mustard	plastid	49.24	28.14
Bra035698.1-P	Field mustard	plastid	48.48	27.95
Bra011942.1-P	Field mustard	plastid	49.24	27.9
Bra018320.1-P	Field mustard	mitochondrion	48.48	27.12
Bra012112.1-P	Field mustard	nucleus, plastid	59.09	23.08
Bra032153.1-P	Field mustard	mitochondrion, nucleus	52.27	22.4
Bra037142.1-P	Field mustard	nucleus, plastid	50.76	17.01

Protein Annotations

EnsemblPlants:Bra033019.1	EnsemblPlants:Bra033019.1-P	EnsemblPlantsGene:Bra033019	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF12	PFAM:PF03195	PFscan:PS50891	UniParc:UPI0002547211	UniProt:M4EW36
MapMan:15.5.24	:	:	:	:	:

Description

AT3G27650 (E=5e-065) LBD25 | LBD25 (LOB DOMAIN-CONTAINING PROTEIN 25)

Coordinates

chrA02:-:21869558..21869956

Molecular Weight (calculated)

14679.3 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.391

Length

132 amino acids

Sequence
(BLAST)

001: MASSYSNYIN SPCAACKFLR RRCTSDCVFA PYFPPDEPTK FANVHRIFGA SNVSKILHEV APHQREDTVN SLAYEAEARL NDPVYGCVGA ISVLQRQVLK
101: LQRELEETNA DLMRYASSLG GEMTSNYGGH RG

Best Arabidopsis Sequence Match ( AT3G27650.1 )
(BLAST)

001: MPKRETKKIK PSQEVIKEGP FLVAIHLKGI YMSNYTNSPC AACKFLRRKC TSDCVFAPYF PPEEPTKFAN VHRIFGASNV SKILHEVAPH QREDAVNSLA
101: YEAEARLKDP VYGCVGAISV LQRQVLRLQR ELEETNADLM RYAGCLGGET TSAYGGRRG

Arabidopsis Description

LBD25LOB domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8Q3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.