Factsheet for Bra026716.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50999	Canola	cytosol, mitochondrion, plastid	95.73	95.73
Bra026042.1-P	Field mustard	mitochondrion	84.76	85.28
AT1G16530.1	Thale cress	mitochondrion	80.49	80.0
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.1	54.12
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	56.1	53.8
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	55.49	53.22
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.49	52.91
KRH43747	Soybean	mitochondrion	54.88	50.85
Bra025294.1-P	Field mustard	plastid	40.85	50.76
Bra039072.1-P	Field mustard	plastid	40.24	50.38
Bra033019.1-P	Field mustard	plastid	40.24	50.0
KRH13706	Soybean	mitochondrion	53.66	49.44
Solyc12g100150.1.1	Tomato	mitochondrion	50.61	49.4
GSMUA_Achr5P02190_001	Banana	mitochondrion	50.0	49.4
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	50.0	48.52
GSMUA_Achr2P13170_001	Banana	nucleus	49.39	46.55
TraesCS4B01G016200.1	Wheat	plastid	49.39	46.29
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	52.44	46.24
HORVU4Hr1G002480.2	Barley	cytosol	50.0	46.07
TraesCS4A01G297500.1	Wheat	plastid	48.17	45.66
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	50.61	45.6
Bra021612.1-P	Field mustard	nucleus	51.22	44.21
Bra018335.1-P	Field mustard	mitochondrion	50.61	43.92
Bra022780.1-P	Field mustard	mitochondrion, nucleus	49.39	43.09
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	51.22	42.21
EER93717	Sorghum	plastid	52.44	41.55
Bra038606.1-P	Field mustard	plastid	44.51	40.33
Bra035860.1-P	Field mustard	plastid	42.07	39.2
Zm00001d033466_P001	Maize	plastid	48.17	37.44
Bra039733.1-P	Field mustard	nucleus, plastid	41.46	33.66
Bra000188.1-P	Field mustard	plastid	40.24	33.17
Bra018675.1-P	Field mustard	plastid	40.85	32.52
Bra016992.1-P	Field mustard	plastid	39.63	32.34
Bra031599.1-P	Field mustard	nucleus, plastid	40.24	31.88
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.68	31.39
Bra000491.1-P	Field mustard	plastid	40.24	28.57
Bra035698.1-P	Field mustard	plastid	39.63	28.38
Bra011942.1-P	Field mustard	plastid	40.24	28.33
TraesCS4D01G014600.1	Wheat	nucleus	49.39	27.55
Bra018320.1-P	Field mustard	mitochondrion	39.63	27.54
Bra032153.1-P	Field mustard	mitochondrion, nucleus	42.07	22.4
Bra012112.1-P	Field mustard	nucleus, plastid	40.24	19.53
Bra037142.1-P	Field mustard	nucleus, plastid	38.41	15.99

Protein Annotations

EnsemblPlants:Bra026716.1	EnsemblPlants:Bra026716.1-P	EnsemblPlantsGene:Bra026716	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	UniParc:UPI0002542C45	UniProt:M4ED56
MapMan:15.5.24	:	:	:	:	:

Description

AT1G16530 (E=3e-075) LBD3, ASL9 | ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)

Coordinates

chrA09:+:33360480..33361740

Molecular Weight (calculated)

18507.3 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.255

Length

164 amino acids

Sequence
(BLAST)

001: MRQKGHRHGG AVSPCAGCKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GARNVNKMLQ VLSENHRSDA VNSLVYEANA RVQDPVYGYV GTISSLHRQL
101: ETLQTQLAFA QAELVHLKTL HHVDTRWPPY MASSITFPTI KDFSSDVNMT FMYDNGAGES LWSC

Best Arabidopsis Sequence Match ( AT1G16530.1 )
(BLAST)

001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC

Arabidopsis Description

LBD3LOB domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA51]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.