Factsheet for Bra000491.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83290	Canola	plastid	100.0	100.0
Bra035698.1-P	Field mustard	plastid	83.12	83.84
AT2G28500.1	Thale cress	plastid	83.55	83.19
Bra011942.1-P	Field mustard	plastid	81.39	80.69
Bra018675.1-P	Field mustard	plastid	66.67	74.76
Bra031599.1-P	Field mustard	nucleus, plastid	61.9	69.08
KRH10407	Soybean	mitochondrion	49.35	66.28
Solyc11g072470.1.1	Tomato	plastid	50.65	61.9
VIT_06s0004g03330.t01	Wine grape	nucleus, plastid	54.11	61.88
KRG89044	Soybean	nucleus, plastid	54.55	61.76
KRH24932	Soybean	nucleus, plastid	53.68	61.39
Solyc04g050010.1.1	Tomato	cytosol	43.72	61.21
KRH22937	Soybean	plastid	52.38	61.11
Solyc06g005090.2.1	Tomato	plastid	51.95	60.61
VIT_06s0004g03350.t01	Wine grape	plastid	52.81	59.8
VIT_13s0019g03700.t01	Wine grape	plastid	50.22	58.88
PGSC0003DMT400019410	Potato	plastid	50.22	58.59
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	43.29	57.8
PGSC0003DMT400065346	Potato	plastid	51.95	57.42
KRG91848	Soybean	plastid	52.38	54.5
KRH34918	Soybean	plastid	52.38	54.5
Solyc05g048740.2.1	Tomato	nucleus, plastid	49.78	53.49
GSMUA_Achr6P33070_001	Banana	plastid	45.02	53.06
PGSC0003DMT400065297	Potato	plastid	48.05	51.39
GSMUA_Achr9P04330_001	Banana	plastid	38.1	49.44
Bra033019.1-P	Field mustard	plastid	28.14	49.24
TraesCS1A01G062200.1	Wheat	cytosol, plastid	43.72	49.03
Bra025294.1-P	Field mustard	plastid	27.71	48.48
Zm00001d035498_P001	Maize	plastid	46.32	48.42
Bra039072.1-P	Field mustard	plastid	27.27	48.09
EES18939	Sorghum	plastid	45.02	47.49
HORVU1Hr1G012720.1	Barley	cytosol, plastid	44.16	47.44
TraesCS1B01G080600.1	Wheat	cytosol, plastid	44.16	47.44
TraesCS2D01G008400.1	Wheat	plastid	44.16	47.44
EER92422	Sorghum	plastid	47.62	46.81
Zm00001d010978_P001	Maize	plastid	42.86	46.7
Zm00001d047752_P001	Maize	plastid	47.19	45.61
TraesCS4D01G197400.1	Wheat	plastid	43.72	45.29
Zm00001d028721_P001	Maize	plastid	45.89	45.11
HORVU4Hr1G056890.2	Barley	plastid	43.72	45.09
TraesCS4B01G197100.1	Wheat	plastid	43.29	44.84
TraesCS4A01G107300.1	Wheat	plastid	42.86	44.39
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.9	44.19
Os03t0287400-01	Rice	plastid	45.45	43.93
Bra026042.1-P	Field mustard	mitochondrion	30.3	42.94
Solyc06g075330.1.1	Tomato	golgi, nucleus, plastid	43.72	41.74
Bra021612.1-P	Field mustard	nucleus	34.2	41.58
Bra018335.1-P	Field mustard	mitochondrion	33.77	41.27
Bra022780.1-P	Field mustard	mitochondrion, nucleus	33.33	40.96
Bra026716.1-P	Field mustard	mitochondrion	28.57	40.24
Bra038606.1-P	Field mustard	plastid	28.14	35.91
Bra035860.1-P	Field mustard	plastid	27.27	35.8
Bra039733.1-P	Field mustard	nucleus, plastid	28.57	32.67
Bra000188.1-P	Field mustard	plastid	27.71	32.16
Bra016992.1-P	Field mustard	plastid	27.71	31.84
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.14	29.15
Bra018320.1-P	Field mustard	mitochondrion	28.14	27.54
Bra032153.1-P	Field mustard	mitochondrion, nucleus	29.0	21.75
Bra012112.1-P	Field mustard	nucleus, plastid	28.14	19.23
Bra037142.1-P	Field mustard	nucleus, plastid	23.81	13.96

Protein Annotations

EnsemblPlants:Bra000491.1	EnsemblPlants:Bra000491.1-P	EnsemblPlantsGene:Bra000491	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301
PANTHER:PTHR31301:SF6	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000253FFB1	UniProt:M4C8G3
MapMan:15.5.24	:	:	:	:	:

Description

AT2G28500 (E=5e-077) LBD11 | LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)

Coordinates

chrA03:+:11383294..11384774

Molecular Weight (calculated)

25397.9 Da

IEP (calculated)

4.648

GRAVY (calculated)

-0.376

Length

231 amino acids

Sequence
(BLAST)

001: MLKMETFGGI SVAAPTSSAV AKTTTPANSA SPTSSPPPPL SPEQPQQQTV VLSPCAACKI LRRRCADKCV LAPYFPPTDP AKFIIAHRVF GASNIIKFLQ
101: ELPESQRTDT VNSMVYEAGA RMRDPVYGCA GAIYHLQKQV CELQAQLAKT QVELVSMQLQ RSDLLELLHK TEQANLSEQQ EGQQNMSFES SFESGDEFIS
201: SHDEVTNDLG FLDDNNNNNN SSMLWSDPLW T

Best Arabidopsis Sequence Match ( AT2G28500.1 )
(BLAST)

001: MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL
101: QELPESQRTD AVNSMVYEAG ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ EQGQQKMSFE SSFESGDEFI
201: SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT

Arabidopsis Description

LBD11LOB domain-containing protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK08]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.