Factsheet for Bra037142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000011.1-P
Bra005177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	Bra000011.1-P	AT2G37630.1	16243907
AT5G66870.1	Bra005177.1-P	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18621	Canola	nucleus, plastid	72.33	94.06
Bra033019.1-P	Field mustard	plastid	17.01	50.76
Bra039072.1-P	Field mustard	plastid	16.5	49.62
VIT_00s1247g00010.t01	Wine grape	nucleus	29.7	48.55
Bra025294.1-P	Field mustard	plastid	16.24	48.48
VIT_07s0197g00030.t01	Wine grape	nucleus	27.66	44.49
Bra038606.1-P	Field mustard	plastid	20.3	44.2
PGSC0003DMT400002013	Potato	nucleus	31.73	43.55
Solyc02g065150.1.1	Tomato	nucleus	31.98	43.3
PGSC0003DMT400002011	Potato	nucleus	31.47	43.06
AT5G66870.1	Thale cress	nucleus	33.76	42.49
KRH62409	Soybean	nucleus	22.84	42.45
Bra035860.1-P	Field mustard	plastid	18.53	41.48
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	18.02	41.28
VIT_07s0197g00020.t01	Wine grape	nucleus	30.46	41.1
Bra039733.1-P	Field mustard	nucleus, plastid	21.07	41.09
KRH53127	Soybean	nucleus	20.81	40.2
KRH76950	Soybean	nucleus	30.96	40.13
Bra012112.1-P	Field mustard	nucleus, plastid	34.26	39.94
Bra026042.1-P	Field mustard	mitochondrion	16.5	39.88
PGSC0003DMT400025959	Potato	nucleus	31.47	39.62
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	29.95	39.46
Bra018335.1-P	Field mustard	mitochondrion	18.78	39.15
KRH57745	Soybean	nucleus	27.41	39.13
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	31.22	39.05
Bra022780.1-P	Field mustard	mitochondrion, nucleus	18.53	38.83
KRH28509	Soybean	nucleus	30.2	38.64
Bra026716.1-P	Field mustard	mitochondrion	15.99	38.41
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	27.92	38.33
Bra021612.1-P	Field mustard	nucleus	18.27	37.89
Bra032153.1-P	Field mustard	mitochondrion, nucleus	27.92	35.71
Zm00001d033335_P001	Maize	plastid	24.87	34.88
GSMUA_Achr6P04670_001	Banana	mitochondrion	25.38	34.72
EER93817	Sorghum	plastid	26.14	34.68
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	24.87	34.51
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	24.62	34.15
TraesCS4A01G235100.1	Wheat	nucleus	24.87	34.03
Zm00001d013732_P001	Maize	plastid	24.87	32.78
Bra000188.1-P	Field mustard	plastid	16.5	32.66
HORVU4Hr1G013630.2	Barley	nucleus	24.62	32.23
GSMUA_Achr2P17160_001	Banana	mitochondrion	24.62	32.23
Bra016992.1-P	Field mustard	plastid	15.74	30.85
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	17.26	30.49
Bra031599.1-P	Field mustard	nucleus, plastid	15.74	29.95
Bra018675.1-P	Field mustard	plastid	14.47	27.67
Bra018320.1-P	Field mustard	mitochondrion	14.97	25.0
Bra011942.1-P	Field mustard	plastid	14.72	24.89
Bra035698.1-P	Field mustard	plastid	14.47	24.89
Os03t0612400-00	Rice	cytosol, nucleus	24.87	24.69
Bra000491.1-P	Field mustard	plastid	13.96	23.81

Protein Annotations

EnsemblPlants:Bra037142.1	EnsemblPlants:Bra037142.1-P	EnsemblPlantsGene:Bra037142	InterPro:IPR004883	InterPro:LOB	PANTHER:PTHR31301
PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002541D15	UniProt:M4F7T1
MapMan:15.5.24	:	:	:	:	:

Description

AT5G66870 (E=1e-050) ASL1, LBD36 | ASL1

Coordinates

chrA09:+:4287000..4288184

Molecular Weight (calculated)

44230.7 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.740

Length

394 amino acids

Sequence
(BLAST)

001: MASSNSPCSA CKFLRRRCTR ECVFAPHFSA DQPNKFSCVH KAFGASNVAK LLSELTFNQR EDAVTSLVYE AETRIQDPVY GCVGLISLQQ QRLKQIQRDT
101: DVARRELATY IGPQAMLPIL QPQQTHLMPQ TPPLQQFVPE TKQAYFMPET QQQTQQPQPE TQQTQFMPQT QETQFMPQTD QTQSMPQTQQ MQFMPQTQKF
201: MPQTQRPSSS SVSAGLTQQQ HHDLFPSMAI PTAQLYQQQF FEFQQLEAVA REKHSEMLRA YGEEGSSSSH QHHQNQPEAQ VLRFNDGFDS VPTGSVTSTG
301: FNQLTPSGTT VTSVSHSLAL GGTYDIETQL TMPTQSSQQL PLQTHDAQLF MSTQASKPQQ QHCEAQLSMP SQSSQPLPLQ TKETQTSSES DEGS

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.