Factsheet for Bra000188.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016992.1-P	Field mustard	plastid	92.46	91.54
CDY07604	Canola	mitochondrion	100.0	85.78
AT2G40470.1	Thale cress	cytosol, nucleus, plastid	93.47	83.04
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	89.95	80.27
VIT_13s0067g02380.t01	Wine grape	nucleus	73.37	65.18
KRH53776	Soybean	nucleus	71.86	64.41
KRH64170	Soybean	nucleus	71.36	63.96
Solyc06g050430.2.1	Tomato	nucleus	66.83	61.29
VIT_06s0004g07790.t01	Wine grape	cytosol	64.32	55.9
Bra025294.1-P	Field mustard	plastid	34.67	52.27
KRH17149	Soybean	cytosol, mitochondrion, nucleus	65.33	52.21
Bra018320.1-P	Field mustard	mitochondrion	61.81	52.12
KRH72805	Soybean	cytosol, mitochondrion, nucleus	65.83	51.78
Bra039072.1-P	Field mustard	plastid	33.17	50.38
Bra033019.1-P	Field mustard	plastid	33.17	50.0
PGSC0003DMT400074783	Potato	mitochondrion	64.32	46.72
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.69	44.77
Bra018335.1-P	Field mustard	mitochondrion	40.2	42.33
Bra022780.1-P	Field mustard	mitochondrion, nucleus	39.7	42.02
Bra026042.1-P	Field mustard	mitochondrion	33.67	41.1
Bra021612.1-P	Field mustard	nucleus	38.69	40.53
Bra026716.1-P	Field mustard	mitochondrion	33.17	40.24
Bra035860.1-P	Field mustard	plastid	35.18	39.77
Bra038606.1-P	Field mustard	plastid	35.68	39.23
Bra039733.1-P	Field mustard	nucleus, plastid	35.18	34.65
Bra031599.1-P	Field mustard	nucleus, plastid	33.17	31.88
Bra018675.1-P	Field mustard	plastid	32.16	31.07
Bra011942.1-P	Field mustard	plastid	35.18	30.04
Bra035698.1-P	Field mustard	plastid	33.67	29.26
Bra000491.1-P	Field mustard	plastid	32.16	27.71
Bra032153.1-P	Field mustard	mitochondrion, nucleus	34.17	22.08
Bra012112.1-P	Field mustard	nucleus, plastid	34.17	20.12
Bra037142.1-P	Field mustard	nucleus, plastid	32.66	16.5

Protein Annotations

EnsemblPlants:Bra000188.1	EnsemblPlants:Bra000188.1-P	EnsemblPlantsGene:Bra000188	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF2	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00025402D3
UniProt:M4C7L0	MapMan:15.5.24	:	:	:	:

Description

AT2G40470 (E=2e-082) LBD15 | LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)

Coordinates

chrA03:-:9790598..9791563

Molecular Weight (calculated)

21456.6 Da

IEP (calculated)

8.592

GRAVY (calculated)

-0.260

Length

199 amino acids

Sequence
(BLAST)

001: MAGIRRPMSG PPGTLNTITP CAACKLLRRR CAQECPFSPY FSPHEPHKFA SVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANVRLRD PVYGCMGAIS
101: ALQQQVQALQ SELTAVRSAI LKYKQREAVA TLILPSNSQV AGFHNSSGVS VIAPPPQTPS TPPQPTVAPP PPSSCVFSQP TTRALEYSDI ENENNSYFG

Best Arabidopsis Sequence Match ( AT2G40470.1 )
(BLAST)

001: MSRERERFEE IGKKIKREAD AWPHQMAGIR RPMSGPPGTL NTITPCAACK LLRRRCAQEC PFSPYFSPHE PHKFASVHKV FGASNVSKML MEVPESQRAD
101: AANSLVYEAN VRLRDPVYGC MGAISALQQQ VQALQAELTA VRSEILKYKQ REAVATLIVP SNSQVAGFHN SGGVSVIAPP PQRPTTPPQP TTAHPPSPSS
201: CVFSQPTTRD LEYGNIESEN NYFG

Arabidopsis Description

LBD15LOB domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5T5]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.