Factsheet for Bra014907.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	98.26	98.26
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	97.09	97.09
KRH50484	Soybean	cytosol, nucleus, plastid	74.42	80.5
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	79.07	80.0
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	77.91	78.82
KRG89441	Soybean	cytosol, nucleus, plastid	73.84	77.44
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	78.49	77.14
Solyc02g069440.2.1	Tomato	nucleus	66.28	70.81
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	66.28	70.81
GSMUA_Achr5P02190_001	Banana	mitochondrion	56.4	58.43
Bra026042.1-P	Field mustard	mitochondrion	53.49	56.44
Bra026716.1-P	Field mustard	mitochondrion	52.91	55.49
Bra025294.1-P	Field mustard	plastid	41.86	54.55
Bra033019.1-P	Field mustard	plastid	41.86	54.55
GSMUA_Achr2P13170_001	Banana	nucleus	54.65	54.02
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.98	53.85
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	58.14	53.76
Bra039072.1-P	Field mustard	plastid	40.12	52.67
TraesCS4B01G016200.1	Wheat	plastid	53.49	52.57
TraesCS4A01G297500.1	Wheat	plastid	52.33	52.02
HORVU4Hr1G002480.2	Barley	cytosol	52.91	51.12
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	56.4	48.74
EER93717	Sorghum	plastid	57.56	47.83
Bra018335.1-P	Field mustard	mitochondrion	51.74	47.09
Bra022780.1-P	Field mustard	mitochondrion, nucleus	50.58	46.28
Bra021612.1-P	Field mustard	nucleus	50.58	45.79
Zm00001d033466_P001	Maize	plastid	55.81	45.5
Bra038606.1-P	Field mustard	plastid	45.93	43.65
Bra035860.1-P	Field mustard	plastid	44.19	43.18
Bra000188.1-P	Field mustard	plastid	44.77	38.69
Bra016992.1-P	Field mustard	plastid	44.77	38.31
Bra018675.1-P	Field mustard	plastid	44.77	37.38
Bra039733.1-P	Field mustard	nucleus, plastid	43.02	36.63
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	45.93	35.43
Bra031599.1-P	Field mustard	nucleus, plastid	42.44	35.27
Bra011942.1-P	Field mustard	plastid	44.77	33.05
Bra000491.1-P	Field mustard	plastid	44.19	32.9
Bra035698.1-P	Field mustard	plastid	43.6	32.75
Bra018320.1-P	Field mustard	mitochondrion	44.19	32.2
TraesCS4D01G014600.1	Wheat	nucleus	52.91	30.95
Bra032153.1-P	Field mustard	mitochondrion, nucleus	43.6	24.35
Bra012112.1-P	Field mustard	nucleus, plastid	41.28	21.01
Bra037142.1-P	Field mustard	nucleus, plastid	41.28	18.02

Protein Annotations

EnsemblPlants:Bra014907.1	EnsemblPlants:Bra014907.1-P	EnsemblPlantsGene:Bra014907	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002540EDA
UniProt:M4DEI6	MapMan:15.5.24	:	:	:	:

Description

AT1G31320 (E=3e-083) LBD4 | LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)

Coordinates

chrA07:-:5302258..5303262

Molecular Weight (calculated)

18670.1 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.361

Length

172 amino acids

Sequence
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQGQLALAQ AEVVHLRVRH STNFPGNGLC PDSPSSSGSP SSKQVSPQDN KGIFSHMDMV DEASLGESMW SC

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.