Factsheet for GSMUA_Achr2P13170_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	75.86	70.97
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	70.11	67.03
GSMUA_Achr5P02190_001	Banana	mitochondrion	61.49	64.46
KRH50484	Soybean	cytosol, nucleus, plastid	56.32	61.64
KRG89441	Soybean	cytosol, nucleus, plastid	56.32	59.76
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	52.87	57.14
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	56.9	56.57
Solyc02g069440.2.1	Tomato	nucleus	52.3	56.52
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	55.17	56.47
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	55.17	56.47
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	54.6	55.56
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	54.6	55.56
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	54.6	55.23
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	54.02	54.65
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.02	54.65
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	52.87	54.12
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	53.45	54.07
TraesCS4A01G297500.1	Wheat	plastid	52.87	53.18
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	43.68	53.15
TraesCS4B01G016200.1	Wheat	plastid	53.45	53.14
HORVU4Hr1G002480.2	Barley	cytosol	53.45	52.25
Solyc12g100150.1.1	Tomato	mitochondrion	50.0	51.79
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	45.98	51.28
GSMUA_Achr10P...	Banana	mitochondrion	46.55	51.27
GSMUA_Achr10P...	Banana	mitochondrion	46.55	51.27
CDY40054	Canola	mitochondrion	47.7	50.92
KRH43747	Soybean	mitochondrion	51.72	50.85
CDY66794	Canola	mitochondrion	47.13	50.31
Bra026042.1-P	Field mustard	mitochondrion	47.13	50.31
AT1G16530.1	Thale cress	mitochondrion	47.7	50.3
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	57.47	50.25
CDX81767	Canola	cytosol, nucleus, plastid	47.13	50.0
CDY50999	Canola	cytosol, mitochondrion, plastid	47.13	50.0
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	48.28	49.7
KRH13706	Soybean	mitochondrion	50.57	49.44
Bra026716.1-P	Field mustard	mitochondrion	46.55	49.39
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	45.4	48.77
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	45.4	48.77
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	44.83	47.85
EER93717	Sorghum	plastid	56.9	47.83
Zm00001d033466_P001	Maize	plastid	54.02	44.55
GSMUA_AchrUn_...	Banana	plastid	40.8	38.59
GSMUA_Achr7P15500_001	Banana	nucleus	43.1	38.27
GSMUA_Achr4P16790_001	Banana	plastid	41.38	37.89
GSMUA_Achr6P33070_001	Banana	plastid	42.53	37.76
GSMUA_Achr9P04330_001	Banana	plastid	36.78	35.96
GSMUA_Achr5P07460_001	Banana	nucleus	40.8	33.97
GSMUA_Achr8P09700_001	Banana	cytosol	39.66	33.82
GSMUA_Achr11P...	Banana	cytosol	41.95	33.64
GSMUA_Achr7P22200_001	Banana	nucleus	40.23	33.18
TraesCS4D01G014600.1	Wheat	nucleus	54.02	31.97
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	39.66	29.49
GSMUA_Achr10P...	Banana	plastid	41.95	29.2
GSMUA_Achr6P04670_001	Banana	mitochondrion	39.66	23.96
GSMUA_Achr2P17160_001	Banana	mitochondrion	33.33	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr2P13170_001	EnsemblPlants:GSMUA_Achr2T13170_001	EnsemblPlantsGene:GSMUA_Achr2G13170_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI00029685AA
UniProt:M0S7K8	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_125.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G13170_001]

Coordinates

chr2:+:15407051..15407666

Molecular Weight (calculated)

18617.2 Da

IEP (calculated)

8.509

GRAVY (calculated)

-0.170

Length

174 amino acids

Sequence
(BLAST)

001: MTEEGRKNST VSPCAACKLL RRRCTQECVF APYFPADEPH KFAIVHRVFG ASNVSKLLQE IAVQHRGDAV SSLVYEANAR VRDPVYGCVA AISSLHRQIQ
101: ALQAQLAVAH AQMAHLRTQN AACLDRVGLG HGQISMGGTG CSTSTGSSSS LSPKHHTLDT VALDQPGSSQ PPVW

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.