Factsheet for GSMUA_Achr6P04670_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P29070_001
GSMUA_Achr7P10550_001
GSMUA_Achr9P03320_001
GSMUA_Achr9P28330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	GSMUA_Achr5P29070_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr7P10550_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr9P03320_001	AT2G37630.1	16243907
AT5G66870.1	GSMUA_Achr9P28330_001	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17160_001	Banana	mitochondrion	60.42	57.81
VIT_00s1247g00010.t01	Wine grape	nucleus	42.01	50.21
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	23.26	46.85
KRH62409	Soybean	nucleus	34.38	46.7
VIT_07s0197g00030.t01	Wine grape	nucleus	39.58	46.53
GSMUA_Achr10P...	Banana	mitochondrion	25.35	46.2
GSMUA_Achr10P...	Banana	mitochondrion	25.35	46.2
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	25.35	45.06
KRH53127	Soybean	nucleus	30.56	43.14
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	23.26	42.95
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	24.31	42.94
PGSC0003DMT400002013	Potato	nucleus	42.71	42.86
Solyc02g065150.1.1	Tomato	nucleus	43.06	42.61
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	23.96	42.59
PGSC0003DMT400002011	Potato	nucleus	42.36	42.36
VIT_07s0197g00020.t01	Wine grape	nucleus	42.71	42.12
KRH76950	Soybean	nucleus	42.71	40.46
GSMUA_Achr5P02190_001	Banana	mitochondrion	23.26	40.36
GSMUA_Achr2P13170_001	Banana	nucleus	23.96	39.66
KRH28509	Soybean	nucleus	42.36	39.61
KRH57745	Soybean	nucleus	37.85	39.49
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	40.97	39.46
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	39.24	39.37
AT5G66870.1	Thale cress	nucleus	42.36	38.98
Zm00001d033335_P001	Maize	plastid	37.85	38.79
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	42.36	38.73
PGSC0003DMT400025959	Potato	nucleus	41.67	38.34
EER93817	Sorghum	plastid	39.24	38.05
CDY49845	Canola	nucleus, plastid	40.62	37.5
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	36.81	37.32
GSMUA_Achr7P15500_001	Banana	nucleus	25.35	37.24
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	36.46	36.97
Zm00001d013732_P001	Maize	plastid	38.19	36.79
CDY52150	Canola	nucleus, plastid	39.93	36.39
GSMUA_Achr8P09700_001	Banana	cytosol	25.69	36.27
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	22.92	36.26
TraesCS4A01G235100.1	Wheat	nucleus	36.11	36.11
Bra012112.1-P	Field mustard	nucleus, plastid	42.01	35.8
CDY01457	Canola	nucleus, plastid	42.01	35.8
CDY12784	Canola	nucleus, plastid	41.67	35.71
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	22.92	35.48
GSMUA_Achr9P04330_001	Banana	plastid	21.88	35.39
GSMUA_Achr4P16790_001	Banana	plastid	23.26	35.26
HORVU4Hr1G013630.2	Barley	nucleus	36.46	34.88
GSMUA_AchrUn_...	Banana	plastid	22.22	34.78
Bra032153.1-P	Field mustard	mitochondrion, nucleus	36.11	33.77
CDX68120	Canola	mitochondrion, nucleus	36.11	33.77
CDX89590	Canola	mitochondrion, nucleus	36.11	33.77
GSMUA_Achr6P33070_001	Banana	plastid	22.57	33.16
GSMUA_Achr5P07460_001	Banana	nucleus	23.61	32.54
AT2G23660.2	Thale cress	mitochondrion, nucleus	35.07	32.48
GSMUA_Achr11P...	Banana	cytosol	23.61	31.34
CDY18621	Canola	nucleus, plastid	32.64	31.02
GSMUA_Achr7P22200_001	Banana	nucleus	22.57	30.81
CDX81360	Canola	plastid	35.42	30.45
GSMUA_Achr10P...	Banana	plastid	26.04	30.0
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	23.61	29.06
Os03t0612400-00	Rice	cytosol, nucleus	37.15	26.95
Bra037142.1-P	Field mustard	nucleus, plastid	34.72	25.38

Protein Annotations

EnsemblPlants:GSMUA_Achr6P04670_001	EnsemblPlants:GSMUA_Achr6T04670_001	EnsemblPlantsGene:GSMUA_Achr6G04670_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI000296D470
UniProt:M0T465	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_197.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G04670_001]

Coordinates

chr6:+:3196123..3196989

Molecular Weight (calculated)

31547.4 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.579

Length

288 amino acids

Sequence
(BLAST)

001: MSSNSPCAAC KFLRRKCTPG CVFAPYFPPD QPTKFAYVHR VFGASNVSKI LSDLNPAQRE DAANSLAYEA EARLRDPVYG CVGYISFLQH KLKQLQHDLY
101: NAKKELSSYI GPAALGPFLP HHHHQRQHHL LPGPSPSSTA YGIPGMGVEM GLGLAAPGTS QQSQILMREE QQPPMAEAQQ MAMAHAAAAR EQEMMMRRYE
201: QQQELARFST TGFPDGGRGY NQIGSGTMVA MATEPHPGMD LVPSPLSFEG PFPAQHFTGQ HHHHPPQMQP EHHRTGSDEG RSGIGPSS

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.