Factsheet for GSMUA_Achr5P02190_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P00880_001	Banana	cytosol, nucleus, plastid	70.48	62.9
KRH50484	Soybean	cytosol, nucleus, plastid	60.24	62.89
GSMUA_Achr2P13170_001	Banana	nucleus	64.46	61.49
GSMUA_Achr4P32000_001	Banana	cytosol, mitochondrion, nucleus, plastid	66.27	60.44
KRG89441	Soybean	cytosol, nucleus, plastid	59.04	59.76
KRH36753	Soybean	cytosol, mitochondrion, nucleus, plastid	59.64	58.24
KRH11753	Soybean	cytosol, mitochondrion, nucleus, plastid	59.04	57.65
VIT_00s0125g00290.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	60.24	57.14
AT1G31320.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	59.04	56.98
CDY50718	Canola	cytosol, mitochondrion, nucleus, plastid	59.04	56.98
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	58.43	56.4
CDX77553	Canola	cytosol, mitochondrion, nucleus, plastid	58.43	56.4
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	54.22	55.9
Solyc02g069440.2.1	Tomato	nucleus	53.61	55.28
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	56.02	54.39
Solyc11g045530.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	56.02	54.39
VIT_19s0027g01120.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	53.01	51.76
HORVU4Hr1G002480.2	Barley	cytosol	55.42	51.69
TraesCS4A01G297500.1	Wheat	plastid	53.61	51.45
TraesCS4B01G016200.1	Wheat	plastid	54.22	51.43
GSMUA_Achr10P...	Banana	mitochondrion	48.8	51.27
CDX81767	Canola	cytosol, nucleus, plastid	50.6	51.22
GSMUA_Achr5P29470_001	Banana	mitochondrion, nucleus	43.98	51.05
KRH43747	Soybean	mitochondrion	54.22	50.85
GSMUA_Achr10P...	Banana	mitochondrion	48.19	50.63
CDY50999	Canola	cytosol, mitochondrion, plastid	50.0	50.61
Solyc12g100150.1.1	Tomato	mitochondrion	50.6	50.0
Bra026716.1-P	Field mustard	mitochondrion	49.4	50.0
Zm00001d013625_P001	Maize	cytosol, mitochondrion, nucleus, plastid	59.64	49.75
AT1G16530.1	Thale cress	mitochondrion	49.4	49.7
CDY40054	Canola	mitochondrion	48.8	49.69
GSMUA_Achr8P02800_001	Banana	mitochondrion, nucleus	48.8	49.69
GSMUA_Achr6P15660_001	Banana	mitochondrion, nucleus, plastid	48.19	49.38
Bra026042.1-P	Field mustard	mitochondrion	48.19	49.08
CDY66794	Canola	mitochondrion	48.19	49.08
KRH13706	Soybean	mitochondrion	52.41	48.88
EER93717	Sorghum	plastid	60.24	48.31
GSMUA_Achr3P10050_001	Banana	cytosol, nucleus, plastid	45.18	48.08
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	48.8	47.93
GSMUA_Achr9P18030_001	Banana	mitochondrion, nucleus, plastid	45.78	46.91
Zm00001d033466_P001	Maize	plastid	56.02	44.08
GSMUA_AchrUn_...	Banana	plastid	45.18	40.76
GSMUA_Achr9P04330_001	Banana	plastid	40.96	38.2
GSMUA_Achr11P...	Banana	cytosol	49.4	37.79
GSMUA_Achr6P33070_001	Banana	plastid	44.58	37.76
GSMUA_Achr7P15500_001	Banana	nucleus	43.98	37.24
GSMUA_Achr4P16790_001	Banana	plastid	41.57	36.32
GSMUA_Achr5P07460_001	Banana	nucleus	45.18	35.89
GSMUA_Achr8P09700_001	Banana	cytosol	42.77	34.8
GSMUA_Achr7P22200_001	Banana	nucleus	43.98	34.6
TraesCS4D01G014600.1	Wheat	nucleus	54.22	30.61
GSMUA_Achr10P...	Banana	plastid	43.37	28.8
GSMUA_Achr3P17800_001	Banana	mitochondrion, plastid	40.36	28.63
GSMUA_Achr6P04670_001	Banana	mitochondrion	40.36	23.26
GSMUA_Achr2P17160_001	Banana	mitochondrion	31.93	17.61

Protein Annotations

EnsemblPlants:GSMUA_Achr5P02190_001	EnsemblPlants:GSMUA_Achr5T02190_001	EnsemblPlantsGene:GSMUA_Achr5G02190_001	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF7	PFAM:PF03195	PFscan:PS50891	SEG:seg	UniParc:UPI0002952F71
UniProt:M0SUZ8	MapMan:15.5.24	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_125.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr5G02190_001]

Coordinates

chr5:+:1395009..1395609

Molecular Weight (calculated)

17915.5 Da

IEP (calculated)

8.702

GRAVY (calculated)

-0.175

Length

166 amino acids

Sequence
(BLAST)

001: MKEAGRQHGT ASPCAACKLL RRRCAWDCVF APHFPADEPQ KFANVHRVFG ASNVSKLLQE IAVQHRGDAV SSLVYEANAR VRDPVYGCVG VISSLHCQVQ
101: ALEAQLAMAR AQMVRLRMLA HLDLGRSPTG TGSTTTGSSS MCPSPIYTPG HGDAGQTPML SFSYER

Best Arabidopsis Sequence Match ( AT1G31320.1 )
(BLAST)

001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC

Arabidopsis Description

LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.