Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH50484 | Soybean | cytosol, nucleus, plastid | 93.9 | 96.86 |
| KRH36753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 84.15 | 81.18 |
| KRH11753 | Soybean | cytosol, mitochondrion, nucleus, plastid | 83.54 | 80.59 |
| VIT_00s0125g00290.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 81.1 | 76.0 |
| Bra014907.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 77.44 | 73.84 |
| CDX77553 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.44 | 73.84 |
| AT1G31320.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 76.83 | 73.26 |
| CDY50718 | Canola | cytosol, mitochondrion, nucleus, plastid | 76.83 | 73.26 |
| Solyc02g069440.2.1 | Tomato | nucleus | 69.51 | 70.81 |
| PGSC0003DMT400054637 | Potato | cytosol, nucleus, plastid | 68.9 | 70.19 |
| KRH43747 | Soybean | mitochondrion | 74.39 | 68.93 |
| KRH13706 | Soybean | mitochondrion | 73.17 | 67.42 |
| GSMUA_Achr7P00880_001 | Banana | cytosol, nucleus, plastid | 67.07 | 59.14 |
| GSMUA_Achr5P02190_001 | Banana | mitochondrion | 59.76 | 59.04 |
| KRH14912 | Soybean | nucleus | 54.88 | 58.82 |
| KRH73255 | Soybean | mitochondrion, nucleus, plastid | 54.88 | 58.44 |
| GSMUA_Achr4P32000_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 62.8 | 56.59 |
| GSMUA_Achr2P13170_001 | Banana | nucleus | 59.76 | 56.32 |
| KRG97685 | Soybean | mitochondrion, nucleus | 56.1 | 55.76 |
| TraesCS4A01G297500.1 | Wheat | plastid | 56.1 | 53.18 |
| TraesCS4B01G016200.1 | Wheat | plastid | 56.71 | 53.14 |
| KRG98217 | Soybean | mitochondrion | 54.88 | 52.33 |
| KRH30173 | Soybean | mitochondrion, nucleus | 54.88 | 52.33 |
| HORVU4Hr1G002480.2 | Barley | cytosol | 56.71 | 52.25 |
| Zm00001d013625_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 62.2 | 51.26 |
| KRH76093 | Soybean | cytosol, endoplasmic reticulum, nucleus | 33.54 | 50.93 |
| EER93717 | Sorghum | plastid | 62.8 | 49.76 |
| Zm00001d033466_P001 | Maize | plastid | 59.76 | 46.45 |
| KRH10407 | Soybean | mitochondrion | 46.95 | 44.77 |
| KRH56556 | Soybean | nucleus, plastid | 44.51 | 42.94 |
| KRG93235 | Soybean | plastid | 43.9 | 42.86 |
| KRH63606 | Soybean | plastid | 47.56 | 42.86 |
| KRH54338 | Soybean | plastid | 47.56 | 42.16 |
| KRH03242 | Soybean | nucleus, plastid | 47.56 | 41.27 |
| KRH07170 | Soybean | plastid | 44.51 | 40.56 |
| KRH24932 | Soybean | nucleus, plastid | 48.78 | 39.6 |
| KRG94119 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 43.9 | 39.56 |
| KRH57118 | Soybean | plastid | 46.95 | 39.09 |
| KRH22937 | Soybean | plastid | 46.95 | 38.89 |
| KRG89044 | Soybean | nucleus, plastid | 46.95 | 37.75 |
| KRH53776 | Soybean | nucleus | 50.61 | 37.39 |
| KRH64170 | Soybean | nucleus | 50.0 | 36.94 |
| KRG91848 | Soybean | plastid | 47.56 | 35.14 |
| KRH34918 | Soybean | plastid | 47.56 | 35.14 |
| KRH13283 | Soybean | nucleus | 43.29 | 33.49 |
| KRH20638 | Soybean | nucleus | 43.29 | 33.18 |
| KRH62409 | Soybean | nucleus | 42.68 | 33.02 |
| KRG88909 | Soybean | nucleus | 42.07 | 32.24 |
| KRH17149 | Soybean | cytosol, mitochondrion, nucleus | 48.78 | 32.13 |
| KRH72805 | Soybean | cytosol, mitochondrion, nucleus | 49.39 | 32.02 |
| TraesCS4D01G014600.1 | Wheat | nucleus | 56.71 | 31.63 |
| KRH53127 | Soybean | nucleus | 37.8 | 30.39 |
| KRH57745 | Soybean | nucleus | 45.73 | 27.17 |
| KRH76950 | Soybean | nucleus | 45.12 | 24.34 |
| KRH28509 | Soybean | nucleus | 45.12 | 24.03 |
Protein Annotations
| EMBL:ACUP02012208 | EnsemblPlants:KRG89441 | EnsemblPlantsGene:GLYMA_20G023400 | EntrezGene:100306560 | InterPro:IPR004883 | InterPro:LOB |
| ncoils:Coil | PANTHER:PTHR31301 | PANTHER:PTHR31301:SF58 | PFAM:PF03195 | PFscan:PS50891 | ProteinID:KRG89441 |
| ProteinID:KRG89441.1 | SEG:seg | UniParc:UPI0006EDA859 | UniProt:A0A0R0EGE3 | MapMan:15.5.24 | : |
Description
hypothetical protein
Coordinates
chr20:+:2493726..2498689
Molecular Weight (calculated)
17896.3 Da
IEP (calculated)
7.339
GRAVY (calculated)
-0.298
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQD LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQTQLAVAQ AEAVHLRVRQ AASLYSPTSP TNSGSPSQAK PIFDMDMVVD QTPYGDSIWI QVEL
101: VLQTQLAVAQ AEAVHLRVRQ AASLYSPTSP TNSGSPSQAK PIFDMDMVVD QTPYGDSIWI QVEL
001: MKESSRKQGA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFANVHRVFG ASNVNKMLQE LPIHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
101: VLQAQLALAQ AEVVHLRVRQ STNFPGHGLC PDSPSSSGSP SSKQVSPQDN KGMFSHMDIV DEASLGESMW SC
Arabidopsis Description
LBD4LOB domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHE9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.