Factsheet for PGSC0003DMT400002013

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022771

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	PGSC0003DMT400022771	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008972	Potato	cytosol	51.22	99.32
PGSC0003DMT400002011	Potato	nucleus	98.95	98.61
Solyc02g065150.1.1	Tomato	nucleus	96.17	94.85
VIT_00s1247g00010.t01	Wine grape	nucleus	55.75	66.39
PGSC0003DMT400025959	Potato	nucleus	71.08	65.18
VIT_07s0197g00030.t01	Wine grape	nucleus	55.05	64.49
VIT_07s0197g00020.t01	Wine grape	nucleus	65.16	64.04
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	62.02	62.02
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	64.46	61.87
KRH76950	Soybean	nucleus	56.1	52.96
KRH62409	Soybean	nucleus	38.33	51.89
KRH28509	Soybean	nucleus	54.36	50.65
KRH53127	Soybean	nucleus	35.89	50.49
PGSC0003DMT400032875	Potato	plastid	27.18	49.68
AT5G66870.1	Thale cress	nucleus	54.01	49.52
PGSC0003DMT400002549	Potato	plastid	31.36	47.62
PGSC0003DMT400017805	Potato	plastid	27.53	47.02
KRH57745	Soybean	nucleus	44.25	46.01
CDY49845	Canola	nucleus, plastid	49.83	45.83
CDY12784	Canola	nucleus, plastid	53.66	45.83
CDY01457	Canola	nucleus, plastid	53.66	45.56
Bra012112.1-P	Field mustard	nucleus, plastid	53.66	45.56
PGSC0003DMT400046644	Potato	nucleus, plastid	29.97	45.03
CDY52150	Canola	nucleus, plastid	49.48	44.94
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	43.9	44.37
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	43.55	44.01
PGSC0003DMT400069646	Potato	plastid	26.83	44.0
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	25.78	43.79
TraesCS4A01G235100.1	Wheat	nucleus	43.9	43.75
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	24.39	43.48
Zm00001d033335_P001	Maize	plastid	42.16	43.06
GSMUA_Achr6P04670_001	Banana	mitochondrion	42.86	42.71
EER93817	Sorghum	plastid	43.21	41.75
HORVU4Hr1G013630.2	Barley	nucleus	43.21	41.2
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	24.74	41.04
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	24.39	40.94
PGSC0003DMT400061511	Potato	mitochondrion	24.39	40.94
Zm00001d013732_P001	Maize	plastid	41.46	39.8
Bra032153.1-P	Field mustard	mitochondrion, nucleus	42.16	39.29
CDX68120	Canola	mitochondrion, nucleus	42.16	39.29
CDX89590	Canola	mitochondrion, nucleus	42.16	39.29
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	23.34	38.73
AT2G23660.2	Thale cress	mitochondrion, nucleus	41.12	37.94
CDX81360	Canola	plastid	43.55	37.31
CDY18621	Canola	nucleus, plastid	39.02	36.96
GSMUA_Achr2P17160_001	Banana	mitochondrion	37.98	36.21
PGSC0003DMT400038248	Potato	nucleus	14.63	32.81
PGSC0003DMT400065346	Potato	plastid	23.34	32.06
PGSC0003DMT400052995	Potato	plastid	22.3	31.84
PGSC0003DMT400019410	Potato	plastid	21.95	31.82
Bra037142.1-P	Field mustard	nucleus, plastid	43.55	31.73
Os03t0612400-00	Rice	cytosol, nucleus	41.46	29.97
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	23.0	29.73
PGSC0003DMT400065297	Potato	plastid	21.95	29.17
PGSC0003DMT400074783	Potato	mitochondrion	22.3	23.36
PGSC0003DMT400041848	Potato	nucleus	4.53	16.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400002013	EnsemblPlantsGene:PGSC0003DMG402000764	EntrezGene:102594824	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG402000764	RefSeq:XP_006360231.1
SEG:seg	UniParc:UPI000295CBF9	UniProt:M0ZJH4	MapMan:15.5.24	:	:

Description

Protein ASYMMETRIC LEAVES2 [Source:PGSC_GENE;Acc:PGSC0003DMG402000764]

Coordinates

chr2:+:23736316..23739528

Molecular Weight (calculated)

32548.4 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.806

Length

287 amino acids

Sequence
(BLAST)

001: MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPRKFENVH KVFGASNVAK LLNELNATQR EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL
101: LNAKKDLATY IGPQAMLPML QHSGYIQQHP NNNPSSSNMM AYNMQPMGLQ QQLMMRDPQQ QQQQQNQQQV IEAHQLAAVM AAREQEMMRT YEQQQFNNGY
201: DSAGPVTATG FHQMSSSVSP SLALASFDND PYQIQQAQQE QHRGQVQVQV QPHQLLQQQQ QLPQQPQTPQ QQQRANSEEE RSIGPSC

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.