Factsheet for PGSC0003DMT400002011

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022771

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66870.1	PGSC0003DMT400022771	AT2G37630.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008972	Potato	cytosol	51.39	100.0
PGSC0003DMT400002013	Potato	nucleus	98.61	98.95
Solyc02g065150.1.1	Tomato	nucleus	94.79	93.81
VIT_00s1247g00010.t01	Wine grape	nucleus	54.51	65.15
PGSC0003DMT400025959	Potato	nucleus	69.79	64.22
VIT_07s0197g00030.t01	Wine grape	nucleus	53.82	63.27
VIT_07s0197g00020.t01	Wine grape	nucleus	63.89	63.01
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	61.11	61.32
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	63.54	61.2
KRH76950	Soybean	nucleus	55.21	52.3
KRH62409	Soybean	nucleus	37.85	51.42
KRH53127	Soybean	nucleus	35.42	50.0
KRH28509	Soybean	nucleus	53.47	50.0
AT5G66870.1	Thale cress	nucleus	53.12	48.88
PGSC0003DMT400032875	Potato	plastid	26.39	48.41
PGSC0003DMT400002549	Potato	plastid	30.56	46.56
PGSC0003DMT400017805	Potato	plastid	26.74	45.83
CDY12784	Canola	nucleus, plastid	53.12	45.54
CDY49845	Canola	nucleus, plastid	49.31	45.51
KRH57745	Soybean	nucleus	43.4	45.29
CDY01457	Canola	nucleus, plastid	53.12	45.27
Bra012112.1-P	Field mustard	nucleus, plastid	53.12	45.27
CDY52150	Canola	nucleus, plastid	48.96	44.62
PGSC0003DMT400046644	Potato	nucleus, plastid	29.17	43.98
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	42.71	43.31
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	42.36	42.96
PGSC0003DMT400069646	Potato	plastid	26.04	42.86
TraesCS4A01G235100.1	Wheat	nucleus	42.71	42.71
PGSC0003DMT400061283	Potato	mitochondrion, nucleus	25.0	42.6
GSMUA_Achr6P04670_001	Banana	mitochondrion	42.36	42.36
PGSC0003DMT400054637	Potato	cytosol, nucleus, plastid	23.61	42.24
Zm00001d033335_P001	Maize	plastid	40.97	41.99
EER93817	Sorghum	plastid	42.01	40.74
HORVU4Hr1G013630.2	Barley	nucleus	42.01	40.2
PGSC0003DMT400078256	Potato	mitochondrion, nucleus, plastid	23.96	39.88
PGSC0003DMT400022286	Potato	cytosol, mitochondrion, nucleus, plastid	23.61	39.77
PGSC0003DMT400061511	Potato	mitochondrion	23.61	39.77
Zm00001d013732_P001	Maize	plastid	40.28	38.8
CDX68120	Canola	mitochondrion, nucleus	41.32	38.64
CDX89590	Canola	mitochondrion, nucleus	41.32	38.64
Bra032153.1-P	Field mustard	mitochondrion, nucleus	41.32	38.64
AT2G23660.2	Thale cress	mitochondrion, nucleus	40.28	37.3
CDX81360	Canola	plastid	43.06	37.01
PGSC0003DMT400010597	Potato	cytosol, nucleus, plastid	22.22	36.99
CDY18621	Canola	nucleus, plastid	38.54	36.63
GSMUA_Achr2P17160_001	Banana	mitochondrion	36.81	35.22
PGSC0003DMT400052995	Potato	plastid	22.22	31.84
PGSC0003DMT400065346	Potato	plastid	22.92	31.58
Bra037142.1-P	Field mustard	nucleus, plastid	43.06	31.47
PGSC0003DMT400019410	Potato	plastid	21.53	31.31
PGSC0003DMT400038248	Potato	nucleus	13.89	31.25
PGSC0003DMT400078265	Potato	cytosol, nucleus, plastid	22.92	29.73
Os03t0612400-00	Rice	cytosol, nucleus	40.28	29.22
PGSC0003DMT400065297	Potato	plastid	21.53	28.7
PGSC0003DMT400074783	Potato	mitochondrion	22.22	23.36
PGSC0003DMT400041848	Potato	nucleus	4.51	16.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400002011	EnsemblPlantsGene:PGSC0003DMG401000764	EntrezGene:102603113	InterPro:IPR004883	InterPro:LOB	ncoils:Coil
PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	PGSC:PGSC0003DMG401000764	RefSeq:XP_006360249.1
SEG:seg	UniParc:UPI0002950E1A	UniProt:M0ZJH3	MapMan:15.5.24	:	:

Description

Asymmetric leaves 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401000764]

Coordinates

chr2:+:23729016..23730239

Molecular Weight (calculated)

32702.6 Da

IEP (calculated)

6.933

GRAVY (calculated)

-0.839

Length

288 amino acids

Sequence
(BLAST)

001: MSSSNSPCAA CKFLRRKCTQ QECVFAPYFP PDQPRKFENV HKVFGRSNVA KLLNELNATQ REDAANSLAY EAEYRLRDPV YGCVGLISIL QHKLKQVQDD
101: LLNAKKDLAT YIGPQAMLPM LQHSGYIQQH PNNNPSSSNM MAYNMQPMGL QQQLMMRDPQ QQQQQQNQQQ VIEAHQLAAV MAAREQEMMR TYEPQQFNNG
201: YDSAGPVTAT GFHQMSSSVS PSLALASFDN DPYQIQQAQQ EQHRGQVQVQ VQPHQLLQQQ QQLPQQPQTP QQQQRANSEE ERSIGPSC

Best Arabidopsis Sequence Match ( AT5G66870.1 )
(BLAST)

001: MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL
101: ENAKKELATY VGPQAMLPIL QPHFMSLPPQ PQRPSSSSAS VLTQHHHNLL PMMAIPTGQL YHQQQQQIFE AQQLAAVARE QQNEMFRAYG GGGGSSSPHH
201: QNQAQAEILR FNNGFDSVPA GSVTVTGFNQ LSSGGTAVTG MSLGGNFVDS PSTNNNYHTD QQLHHHHQPQ QHHEAQLFIP SQSSQPLPLQ TQETQTQTQP
301: NSESEEGRRN VIG

Arabidopsis Description

LBD36LOB domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.