Factsheet for Bra032153.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89590	Canola	mitochondrion, nucleus	100.0	100.0
CDX68120	Canola	mitochondrion, nucleus	100.0	100.0
AT2G23660.2	Thale cress	mitochondrion, nucleus	86.04	85.21
Bra039072.1-P	Field mustard	plastid	22.4	52.67
Bra033019.1-P	Field mustard	plastid	22.4	52.27
Bra025294.1-P	Field mustard	plastid	22.08	51.52
VIT_00s1247g00010.t01	Wine grape	nucleus	37.01	47.3
Bra038606.1-P	Field mustard	plastid	26.62	45.3
VIT_07s0197g00030.t01	Wine grape	nucleus	35.39	44.49
Bra035860.1-P	Field mustard	plastid	25.32	44.32
Bra014907.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.35	43.6
Bra039733.1-P	Field mustard	nucleus, plastid	28.57	43.56
Bra026042.1-P	Field mustard	mitochondrion	23.05	43.56
KRH62409	Soybean	nucleus	29.55	42.92
PGSC0003DMT400002013	Potato	nucleus	39.29	42.16
Bra026716.1-P	Field mustard	mitochondrion	22.4	42.07
Solyc02g065150.1.1	Tomato	nucleus	39.61	41.92
VIT_07s0197g00020.t01	Wine grape	nucleus	39.61	41.78
KRH53127	Soybean	nucleus	27.6	41.67
PGSC0003DMT400002011	Potato	nucleus	38.64	41.32
VIT_07s0197g00040.t01	Wine grape	cytosol, nucleus, plastid	38.96	40.13
VIT_16s0022g02050.t01	Wine grape	cytosol, mitochondrion, nucleus	37.01	39.72
KRH57745	Soybean	nucleus	34.74	38.77
Bra018335.1-P	Field mustard	mitochondrion	23.7	38.62
Bra022780.1-P	Field mustard	mitochondrion, nucleus	23.38	38.3
Bra021612.1-P	Field mustard	nucleus	23.38	37.89
KRH28509	Soybean	nucleus	37.34	37.34
PGSC0003DMT400025959	Potato	nucleus	37.66	37.06
KRH76950	Soybean	nucleus	36.36	36.84
Solyc02g090410.2.1	Tomato	mitochondrion, plastid	37.34	36.51
GSMUA_Achr6P04670_001	Banana	mitochondrion	33.77	36.11
Bra018675.1-P	Field mustard	plastid	23.7	35.44
Bra031599.1-P	Field mustard	nucleus, plastid	23.7	35.27
Bra012112.1-P	Field mustard	nucleus, plastid	38.31	34.91
Bra000188.1-P	Field mustard	plastid	22.08	34.17
Bra016992.1-P	Field mustard	plastid	21.43	32.84
TraesCS4D01G078800.1	Wheat	mitochondrion, nucleus, plastid	30.19	32.75
Zm00001d033335_P001	Maize	plastid	29.22	32.03
Bra004572.1-P	Field mustard	cytosol, mitochondrion, nucleus	23.05	31.84
Zm00001d013732_P001	Maize	plastid	30.84	31.77
TraesCS4B01G079900.1	Wheat	mitochondrion, nucleus, plastid	29.22	31.69
Bra035698.1-P	Field mustard	plastid	23.05	31.0
EER93817	Sorghum	plastid	29.87	30.98
TraesCS4A01G235100.1	Wheat	nucleus	28.9	30.9
Bra011942.1-P	Field mustard	plastid	22.73	30.04
HORVU4Hr1G013630.2	Barley	nucleus	28.9	29.57
Bra000491.1-P	Field mustard	plastid	21.75	29.0
GSMUA_Achr2P17160_001	Banana	mitochondrion	28.25	28.9
Bra037142.1-P	Field mustard	nucleus, plastid	35.71	27.92
Bra018320.1-P	Field mustard	mitochondrion	20.78	27.12
Os03t0612400-00	Rice	cytosol, nucleus	31.49	24.43

Protein Annotations

EnsemblPlants:Bra032153.1	EnsemblPlants:Bra032153.1-P	EnsemblPlantsGene:Bra032153	InterPro:IPR004883	InterPro:LOB	InterPro:LOBD
ncoils:Coil	PANTHER:PTHR31301	PANTHER:PTHR31301:SF22	PFAM:PF03195	PFscan:PS50891	PIRSF:PIRSF038155
SEG:seg	UniParc:UPI00025447B7	UniProt:M4ETM1	MapMan:15.5.24	:	:

Description

AT2G23660 (E=3e-118) LBD10 | LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10)

Coordinates

chrA04:-:10493828..10494754

Molecular Weight (calculated)

34412.8 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.640

Length

308 amino acids

Sequence
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTQ PQKFIYVHKV FGASNVTKIL NDLPPPSRED AVNSLYYEAE ARIRDPIYGC VGLISFLQQC LKKIQQDLVT
101: AKEELAGYIG PDAVNPQQPY LPPLANNPPP NFMMAMEGMP HGVVPQGEPL IMREPNMPQH QHQPQDEQMQ LMGTDAHRMA AMILERGDQQ GMFNGYGIDN
201: NGSVTATGFN QMDVNDHTSG GSMSGPSLAL GSFGDAYQMG HETEHHISHD QLQTQLMLQP PLQEGQEQNE GQFLMQPMGQ ENLHEEEDEE ELEPPVKWRK
301: SESKEASY

Best Arabidopsis Sequence Match ( AT2G23660.1 )
(BLAST)

001: MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFIFVHRV FGASNVTKIL NDLPPDQRED TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKIQQDLLT
101: AKEELVGYLG PDAVIPPPYL PPIGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNMSQQH HHQQPQDEQL QFIASDAQRM AAMMLERGDQ QGMFNGYGID
201: NNGSVTATGF NQMDVNDQGA GGSLSGPSLA LGSFGDAYQM GQETEHGHIN HDQLQTQLML QPPLQEGQEQ TEEGQFLMQP MGQENLHDEE EEEELEPPVK
301: WRMSENKEAS F

Arabidopsis Description

LBD10LOB domain-containing protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O64836]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.